RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 MUM1Q2TAK8 710 aa5.93□□□□□ -1.46
CD44-215ENST00000525241 KRTAP1-3Q8IUG1 177 aa5.93□□□□□ -1.46
CD44-215ENST00000525241 PLA2G15Q8NCC3 412 aa5.93□□□□□ -1.46
CD44-215ENST00000525241 PIK3C3Q8NEB9 887 aa5.93□□□□□ -1.46
CD44-215ENST00000525241 C1orf162Q8NEQ5 155 aaPredicted RBP5.93□□□□□ -1.46
CD44-215ENST00000525241 GCDHQ92947 438 aaPredicted RBP5.93□□□□□ -1.46
CD44-215ENST00000525241 SLC7A6OSQ96CW6 309 aaPredicted RBP5.93□□□□□ -1.46
CD44-215ENST00000525241 SSBP3Q9BWW4 388 aaPredicted RBP5.93□□□□□ -1.46
CD44-215ENST00000525241 DNAJC28Q9NX36 388 aa5.93□□□□□ -1.46
CD44-215ENST00000525241 RBM8AQ9Y5S9 174 aaKnown RBP5.93□□□□□ -1.46
CD44-215ENST00000525241 FZD9O00144 591 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 DAPK3O43293 454 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 MT-CO1P00395 513 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 MTHFD2P13995 350 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 NRG3P56975 720 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 ADAM8P78325 824 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 EXOSC10Q01780 885 aaKnown RBP5.92□□□□□ -1.46
CD44-215ENST00000525241 MGAT5Q09328 741 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 TCIRG1Q13488 830 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 ABCB5Q2M3G0 1257 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 SLFN13Q68D06 897 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 PGM2L1Q6PCE3 622 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 GLB1L2Q8IW92 636 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 UNC5BQ8IZJ1 945 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 AUTS2Q8WXX7 1259 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 FAXDC2Q96IV6 333 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 LMF1Q96S06 567 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 RBM15Q96T37 977 aaKnown RBP eCLIP5.92□□□□□ -1.46
CD44-215ENST00000525241 SLC6A15Q9H2J7 730 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 JADE2Q9NQC1 790 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 ZNF277Q9NRM2 450 aaPredicted RBP5.92□□□□□ -1.46
CD44-215ENST00000525241 ZNF536O15090 1300 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 TNKSO95271 1327 aa5.92□□□□□ -1.46
CD44-215ENST00000525241 MYBL2P10244 700 aa5.91□□□□□ -1.46
CD44-215ENST00000525241 RBP3P10745 1247 aa5.91□□□□□ -1.46
CD44-215ENST00000525241 AGXTP21549 392 aa5.91□□□□□ -1.46
CD44-215ENST00000525241 KIR2DL3P43628 341 aa5.91□□□□□ -1.46
CD44-215ENST00000525241 CDK17Q00537 523 aa5.91□□□□□ -1.46
CD44-215ENST00000525241 NFIXQ14938 502 aa5.91□□□□□ -1.46
CD44-215ENST00000525241 LMBR1LQ6UX01 489 aa5.91□□□□□ -1.46
CD44-215ENST00000525241 FUBP3Q96I24 572 aaKnown RBP eCLIP5.91□□□□□ -1.46
CD44-215ENST00000525241 LRRC37BQ96QE4 947 aa5.91□□□□□ -1.46
CD44-215ENST00000525241 DPYSL5Q9BPU6 564 aa5.91□□□□□ -1.46
CD44-215ENST00000525241 IFT122Q9HBG6 1241 aa5.91□□□□□ -1.46
CD44-215ENST00000525241 PUF60Q9UHX1 559 aaKnown RBP5.91□□□□□ -1.46
CD44-215ENST00000525241 OAZ3Q9UMX2 235 aa5.91□□□□□ -1.46
CD44-215ENST00000525241 SHTN1A0MZ66 631 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 PMS2P1A4D2B8 440 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 NPEPPSL1A6NEC2 478 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 SLC26A4O43511 780 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 PCDHGA12O60330 932 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 TMEM127O75204 238 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 TOX4O94842 621 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 CFBP00751 764 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 PDGFRBP09619 1106 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 VSIG10L2P0DP72 767 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 OSMP13725 252 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 CR2P20023 1033 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 CTSWP56202 376 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 BPIFB4P59827 614 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 DUSP8Q13202 625 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 SAFB2Q14151 953 aaKnown RBP eCLIP5.9□□□□□ -1.46
CD44-215ENST00000525241 PCBP2Q15366 365 aaKnown RBP eCLIP5.9□□□□□ -1.46
CD44-215ENST00000525241 TAS1R1Q7RTX1 841 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 LIMS2Q7Z4I7 341 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 AMOTL1Q8IY63 956 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 GPR135Q8IZ08 494 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 ANKRD53Q8N9V6 530 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 RABGGTAQ92696 567 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 RPL10LQ96L21 214 aaKnown RBP5.9□□□□□ -1.46
CD44-215ENST00000525241 GNRHR2Q96P88 292 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 UIMC1Q96RL1 719 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 GPHA2Q96T91 129 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 SMAD5Q99717 465 aaKnown RBP5.9□□□□□ -1.46
CD44-215ENST00000525241 C14orf93Q9H972 538 aaKnown RBP5.9□□□□□ -1.46
CD44-215ENST00000525241 AGO3Q9H9G7 860 aaKnown RBP5.9□□□□□ -1.46
CD44-215ENST00000525241 MKS1Q9NXB0 559 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 ING3Q9NXR8 418 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 PCDHGA9Q9Y5G4 932 aaKnown RBP5.9□□□□□ -1.46
CD44-215ENST00000525241 PCDHGA8Q9Y5G5 932 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 PCDHGA7Q9Y5G6 932 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 PCDHGA6Q9Y5G7 932 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 PCDHGA3Q9Y5H0 932 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 PCDHGA2Q9Y5H1 932 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 GPR45Q9Y5Y3 372 aa5.9□□□□□ -1.46
CD44-215ENST00000525241 ARID1BQ8NFD5 2236 aaPredicted RBP5.9□□□□□ -1.47
CD44-215ENST00000525241 GPR42O15529 346 aa5.89□□□□□ -1.47
CD44-215ENST00000525241 CDC14BO60729 498 aa5.89□□□□□ -1.47
CD44-215ENST00000525241 ITGB3P05106 788 aa5.89□□□□□ -1.47
CD44-215ENST00000525241 SLC5A3P53794 718 aa5.89□□□□□ -1.47
CD44-215ENST00000525241 CCT2P78371 535 aaKnown RBP5.89□□□□□ -1.47
CD44-215ENST00000525241 KRT85P78386 507 aa5.89□□□□□ -1.47
CD44-215ENST00000525241 UBE3CQ15386 1083 aa5.89□□□□□ -1.47
CD44-215ENST00000525241 ADRM1Q16186 407 aa5.89□□□□□ -1.47
CD44-215ENST00000525241 ANO4Q32M45 955 aa5.89□□□□□ -1.47
CD44-215ENST00000525241 GAGE13Q4V321 117 aa5.89□□□□□ -1.47
CD44-215ENST00000525241 TAX1BP1Q86VP1 789 aa5.89□□□□□ -1.47
CD44-215ENST00000525241 ANKRD13AQ8IZ07 590 aa5.89□□□□□ -1.47
CD44-215ENST00000525241 MSL3Q8N5Y2 521 aaKnown RBP5.89□□□□□ -1.47
CD44-215ENST00000525241 CXorf38Q8TB03 319 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms