RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 ZNF655Q8N720 491 aaPredicted RBP6.28□□□□□ -1.4
USP47-204ENST00000525078 LSMEM1Q8N8F7 131 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 DAGLBQ8NCG7 672 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 PLBD2Q8NHP8 589 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 DLG3Q92796 817 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 NELL1Q92832 810 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 KAT5Q92993 513 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 ATP6V1E2Q96A05 226 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 RSRC1Q96IZ7 334 aaKnown RBP6.28□□□□□ -1.4
USP47-204ENST00000525078 C16orf92Q96LL3 132 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 NELL2Q99435 816 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 CDIP1Q9H305 208 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 GSX1Q9H4S2 264 aaPredicted RBP6.28□□□□□ -1.4
USP47-204ENST00000525078 CNTD2Q9H8S5 307 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 AASSQ9UDR5 926 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 JAG2Q9Y219 1238 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 ATP23Q9Y6H3 246 aa6.28□□□□□ -1.4
USP47-204ENST00000525078 SHISA3A0PJX4 238 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 TSPY2A6NKD2 308 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 LGALS16A8MUM7 142 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 H3BUI4 141 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 H7BY64 318 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 ACKR2O00590 384 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 NPHS1O60500 1241 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 CLASP2O75122 1294 aaKnown RBP6.27□□□□□ -1.41
USP47-204ENST00000525078 ZBED4O75132 1171 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 TSPY3P0CV98 308 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 TSPY8P0CW00 308 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 LIFRP42702 1097 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 MAP2K3P46734 347 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 ATXN1P54253 815 aaKnown RBP6.27□□□□□ -1.41
USP47-204ENST00000525078 TSPY1Q01534 308 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 IL10RAQ13651 578 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 SPIDRQ14159 915 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 CNGA2Q16280 664 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 UVSSAQ2YD98 709 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 RNFT1Q5M7Z0 435 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 ZNF385CQ66K41 422 aaPredicted RBP6.27□□□□□ -1.41
USP47-204ENST00000525078 JMJD6Q6NYC1 403 aaPredicted RBP6.27□□□□□ -1.41
USP47-204ENST00000525078 LRRTM4Q86VH4 590 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 NAT16Q8N8M0 369 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 IL31RAQ8NI17 732 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 NANOS1Q8WY41 292 aaKnown RBP6.27□□□□□ -1.41
USP47-204ENST00000525078 CENPIQ92674 756 aaPredicted RBP6.27□□□□□ -1.41
USP47-204ENST00000525078 ERCC4Q92889 916 aaPredicted RBP6.27□□□□□ -1.41
USP47-204ENST00000525078 TCTN2Q96GX1 697 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 COX4I2Q96KJ9 171 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 PTCHD1Q96NR3 888 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 COLEC11Q9BWP8 271 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 COL25A1Q9BXS0 654 aaPredicted RBP6.27□□□□□ -1.41
USP47-204ENST00000525078 STK31Q9BXU1 1019 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 HDAC8Q9BY41 377 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 CD244Q9BZW8 370 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 LMAN2LQ9H0V9 348 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 WNT8AQ9H1J5 351 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 DSEQ9UL01 958 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 SLC39A10Q9ULF5 831 aa6.27□□□□□ -1.41
USP47-204ENST00000525078 ISY1Q9ULR0 285 aaKnown RBP6.27□□□□□ -1.41
USP47-204ENST00000525078 CFAP20Q9Y6A4 193 aaKnown RBP6.27□□□□□ -1.41
USP47-204ENST00000525078 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.26□□□□□ -1.41
USP47-204ENST00000525078 C7orf72A4D263 438 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 TISP43B9A030 160 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 B9A039 149 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 RBAK-RBAKDNI3L0D1 243 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 TRIM38O00635 465 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 TOR1BO14657 336 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 SOAT2O75908 522 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 WISP1O95388 367 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 SYPP08247 313 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 ZNF865P0CJ78 1059 aaPredicted RBP6.26□□□□□ -1.41
USP47-204ENST00000525078 KITP10721 976 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 FNTBP49356 437 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 FMO1Q01740 532 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 TUSC3Q13454 348 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 FBXO47Q5MNV8 452 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 RNF152Q8N8N0 203 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 C2CD4AQ8NCU7 369 aaPredicted RBP6.26□□□□□ -1.41
USP47-204ENST00000525078 WHAMMQ8TF30 809 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 TSPEARQ8WU66 669 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 ANKS1AQ92625 1134 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 DPF2Q92785 391 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 MAML3Q96JK9 1138 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 TUBGCP5Q96RT8 1024 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 HEPHQ9BQS7 1158 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 PYM1Q9BRP8 204 aaKnown RBP6.26□□□□□ -1.41
USP47-204ENST00000525078 CDADC1Q9BWV3 514 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 LSM14BQ9BX40 385 aaKnown RBP6.26□□□□□ -1.41
USP47-204ENST00000525078 STK33Q9BYT3 514 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 EPB41L1Q9H4G0 881 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 RETREG1Q9H6L5 497 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 JMJD4Q9H9V9 463 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 MRGBPQ9NV56 204 aa6.26□□□□□ -1.41
USP47-204ENST00000525078 COA3Q9Y2R0 106 aaPredicted RBP6.26□□□□□ -1.41
USP47-204ENST00000525078 USP19O94966 1318 aa6.25□□□□□ -1.41
USP47-204ENST00000525078 ISM1B1AKI9 464 aa6.25□□□□□ -1.41
USP47-204ENST00000525078 B4DLN1 442 aa6.25□□□□□ -1.41
USP47-204ENST00000525078 F8W8V4 182 aa6.25□□□□□ -1.41
USP47-204ENST00000525078 ELL2O00472 640 aaPredicted RBP6.25□□□□□ -1.41
USP47-204ENST00000525078 NPC1O15118 1278 aa6.25□□□□□ -1.41
USP47-204ENST00000525078 SLC16A6O15403 523 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms