RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CABP5Q9NP86 173 aa4.45□□□□□ -1.7
NUP54-208ENST00000508604 MTSS1O43312 755 aa4.44□□□□□ -1.7
NUP54-208ENST00000508604 ATP2B1P20020 1258 aa4.44□□□□□ -1.7
NUP54-208ENST00000508604 AVPR1BP47901 424 aa4.44□□□□□ -1.7
NUP54-208ENST00000508604 ADCY1Q08828 1119 aa4.44□□□□□ -1.7
NUP54-208ENST00000508604 C1QL3Q5VWW1 255 aa4.44□□□□□ -1.7
NUP54-208ENST00000508604 ZKSCAN2Q63HK3 967 aa4.44□□□□□ -1.7
NUP54-208ENST00000508604 IQSEC1Q6DN90 963 aa4.44□□□□□ -1.7
NUP54-208ENST00000508604 GLB1L3Q8NCI6 653 aaPredicted RBP4.44□□□□□ -1.7
NUP54-208ENST00000508604 ZSWIM2Q8NEG5 633 aa4.44□□□□□ -1.7
NUP54-208ENST00000508604 HDAC5Q9UQL6 1122 aa4.44□□□□□ -1.7
NUP54-208ENST00000508604 GRID2IPA4D2P6 1211 aa4.43□□□□□ -1.7
NUP54-208ENST00000508604 HNRNPLP14866 589 aaKnown RBP eCLIP4.43□□□□□ -1.7
NUP54-208ENST00000508604 NR4A1P22736 598 aa4.43□□□□□ -1.7
NUP54-208ENST00000508604 C21orf58P58505 322 aa4.43□□□□□ -1.7
NUP54-208ENST00000508604 ERCC6LQ2NKX8 1250 aa4.43□□□□□ -1.7
NUP54-208ENST00000508604 OLFML1Q6UWY5 402 aa4.43□□□□□ -1.7
NUP54-208ENST00000508604 LRP10Q7Z4F1 713 aa4.43□□□□□ -1.7
NUP54-208ENST00000508604 FAM83AQ86UY5 434 aa4.43□□□□□ -1.7
NUP54-208ENST00000508604 LCORLQ8N3X6 602 aa4.43□□□□□ -1.7
NUP54-208ENST00000508604 HIRIP3Q9BW71 556 aaPredicted RBP4.43□□□□□ -1.7
NUP54-208ENST00000508604 TNPO3Q9Y5L0 923 aaKnown RBP4.43□□□□□ -1.7
NUP54-208ENST00000508604 HS3ST4Q9Y661 456 aa4.43□□□□□ -1.7
NUP54-208ENST00000508604 GRXCR1A8MXD5 290 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 M0R2C6 588 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 KCNQ2O43526 872 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 CDK4P11802 303 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 KCNA6P17658 529 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 ADCY2Q08462 1091 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 METTL24Q5JXM2 366 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 LRCH2Q5VUJ6 765 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 ABHD17CQ6PCB6 329 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 C7orf31Q8N865 590 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 CHST14Q8NCH0 376 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 HIST1H2AHQ96KK5 128 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 DEPDC7Q96QD5 511 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 HIST1H2AJQ99878 128 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 SLC46A2Q9BY10 475 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 OSBPL6Q9BZF3 934 aa4.42□□□□□ -1.7
NUP54-208ENST00000508604 KIAA0355O15063 1070 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 APOL3O95236 402 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 EPHA7Q15375 998 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 FGD2Q7Z6J4 655 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 PHYKPLQ8IUZ5 450 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 KIAA1958Q8N8K9 716 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 OR5M3Q8NGP4 307 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 NELL1Q92832 810 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 MYEOVQ96EZ4 313 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 PDCD2LQ9BRP1 358 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 TANGO6Q9C0B7 1094 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 KCNH6Q9H252 994 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 SAMD15Q9P1V8 674 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 COL4A3Q01955 1670 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 A0A0A6YYK5 440 aaPredicted RBP4.41□□□□□ -1.7
NUP54-208ENST00000508604 PTPDC1A2A3K4 754 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 HOXA3O43365 443 aaPredicted RBP4.41□□□□□ -1.7
NUP54-208ENST00000508604 BEND2Q8NDZ0 799 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 DCLRE1CQ96SD1 692 aaKnown RBP4.41□□□□□ -1.7
NUP54-208ENST00000508604 NOL10Q9BSC4 688 aaKnown RBP4.41□□□□□ -1.7
NUP54-208ENST00000508604 HAPLN2Q9GZV7 340 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 CLCA2Q9UQC9 943 aa4.41□□□□□ -1.7
NUP54-208ENST00000508604 RNASET2O00584 256 aaKnown RBP4.4□□□□□ -1.71
NUP54-208ENST00000508604 DNAJC6O75061 913 aa4.4□□□□□ -1.71
NUP54-208ENST00000508604 STC2O76061 302 aa4.4□□□□□ -1.71
NUP54-208ENST00000508604 IGFALSP35858 605 aa4.4□□□□□ -1.71
NUP54-208ENST00000508604 MECP2P51608 486 aaKnown RBP4.4□□□□□ -1.71
NUP54-208ENST00000508604 WNT3AP56704 352 aa4.4□□□□□ -1.71
NUP54-208ENST00000508604 VPS72Q15906 364 aa4.4□□□□□ -1.71
NUP54-208ENST00000508604 ZCCHC8Q6NZY4 707 aaKnown RBP4.4□□□□□ -1.71
NUP54-208ENST00000508604 RD3Q7Z3Z2 195 aa4.4□□□□□ -1.71
NUP54-208ENST00000508604 CXorf67Q86X51 503 aaPredicted RBP4.4□□□□□ -1.71
NUP54-208ENST00000508604 ZZZ3Q8IYH5 903 aa4.4□□□□□ -1.71
NUP54-208ENST00000508604 CAVIN3Q969G5 261 aa4.4□□□□□ -1.71
NUP54-208ENST00000508604 BBC3Q96PG8 261 aaPredicted RBP4.4□□□□□ -1.71
NUP54-208ENST00000508604 MTG2Q9H4K7 406 aa4.4□□□□□ -1.71
NUP54-208ENST00000508604 TRPM5Q9NZQ8 1165 aa4.4□□□□□ -1.71
NUP54-208ENST00000508604 A0A0A6YYJ9 748 aa4.39□□□□□ -1.71
NUP54-208ENST00000508604 CENPVL1A0A0U1RR11 272 aa4.39□□□□□ -1.71
NUP54-208ENST00000508604 DVL2O14641 736 aa4.39□□□□□ -1.71
NUP54-208ENST00000508604 FLT3P36888 993 aa4.39□□□□□ -1.71
NUP54-208ENST00000508604 ZEB1P37275 1124 aaPredicted RBP4.39□□□□□ -1.71
NUP54-208ENST00000508604 RASA3Q14644 834 aa4.39□□□□□ -1.71
NUP54-208ENST00000508604 MYBPC3Q14896 1274 aa4.39□□□□□ -1.71
NUP54-208ENST00000508604 FAM214AQ32MH5 1076 aa4.39□□□□□ -1.71
NUP54-208ENST00000508604 Q6YL49 198 aa4.39□□□□□ -1.71
NUP54-208ENST00000508604 NDC1Q9BTX1 674 aa4.39□□□□□ -1.71
NUP54-208ENST00000508604 PITHD1Q9GZP4 211 aaPredicted RBP4.39□□□□□ -1.71
NUP54-208ENST00000508604 SERHL2Q9H4I8 314 aa4.39□□□□□ -1.71
NUP54-208ENST00000508604 TRIM39Q9HCM9 518 aa4.39□□□□□ -1.71
NUP54-208ENST00000508604 SPATA31A6Q5VVP1 1343 aa4.39□□□□□ -1.71
NUP54-208ENST00000508604 GAGE12BA1L429 117 aa4.38□□□□□ -1.71
NUP54-208ENST00000508604 GAGE12HA6NDE8 117 aa4.38□□□□□ -1.71
NUP54-208ENST00000508604 OPA1O60313 960 aa4.38□□□□□ -1.71
NUP54-208ENST00000508604 GLRX3O76003 335 aaKnown RBP4.38□□□□□ -1.71
NUP54-208ENST00000508604 ALDH1A2O94788 518 aa4.38□□□□□ -1.71
NUP54-208ENST00000508604 PRPF6O94906 941 aaKnown RBP4.38□□□□□ -1.71
NUP54-208ENST00000508604 HSP90B1P14625 803 aaKnown RBP4.38□□□□□ -1.71
NUP54-208ENST00000508604 DDB1Q16531 1140 aa4.38□□□□□ -1.71
NUP54-208ENST00000508604 KIAA1841Q6NSI8 718 aa4.38□□□□□ -1.71
NUP54-208ENST00000508604 UBE2R2Q712K3 238 aaPredicted RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms