RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SLC7A3Q8WY07 619 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 POP1Q99575 1024 aaKnown RBP11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 DPH5Q9H2P9 285 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MAGEF1Q9HAY2 307 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 NXF1Q9UBU9 619 aaKnown RBP11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 NFU1Q9UMS0 254 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CTNNA2P26232 953 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 LSP1P33241 339 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 IFNAR2P48551 515 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MAP1SQ66K74 1059 aaPredicted RBP11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CYB5D1Q6P9G0 228 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MIPOL1Q8TD10 442 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CCHCR1Q8TD31 782 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SLC10A4Q96EP9 437 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 OSBPL9Q96SU4 736 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MMS19Q96T76 1030 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 DUSP9Q99956 384 aaKnown RBP11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MTFR1LQ9H019 292 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 EPN3Q9H201 632 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SPON1Q9HCB6 807 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 G3BP2Q9UN86 482 aaKnown RBP11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 GMNCA6NCL1 334 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 TMOD1P28289 359 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 YWHABP31946 246 aaKnown RBP11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 TFAMQ00059 246 aaKnown RBP11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ZNF365Q70YC5 407 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ARMC9Q7Z3E5 817 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 HOOK3Q86VS8 718 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 DAGLBQ8NCG7 672 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 NSMCE1Q8WV22 266 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MS4A14Q96JA4 679 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PI4K2AQ9BTU6 479 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 FHDC1Q9C0D6 1143 aaPredicted RBP11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 FAM53CQ9NYF3 392 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ITGB4P16144 1822 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 HMGB1P1B2RPK0 211 aaPredicted RBP11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SESN3P58005 492 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 TMEM62Q0P6H9 643 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 KCNB1Q14721 858 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 FAM47CQ5HY64 1035 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 WDR44Q5JSH3 913 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 RINT1Q6NUQ1 792 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 FAM43BQ6ZT52 329 aaPredicted RBP11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 LRRC71Q8N4P6 559 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 LRRC15Q8TF66 581 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 HSD3B7Q9H2F3 369 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 LIMA1Q9UHB6 759 aaKnown RBP11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 KCNG1Q9UIX4 513 aa11.57□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 DIAPH2O60879 1101 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 FXR2P51116 673 aaKnown RBP eCLIP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MTMR3Q13615 1198 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 RPS6KA1Q15418 735 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PDCD2Q16342 344 aaPredicted RBP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 IFI16Q16666 785 aaKnown RBP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ALKBH5Q6P6C2 394 aaKnown RBP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CCNI2Q6ZMN8 369 aaPredicted RBP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 C15orf52Q6ZUT6 534 aaKnown RBP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 AGBL3Q8NEM8 1001 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MGARPQ8TDB4 240 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SCFD1Q8WVM8 642 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ANKS1AQ92625 1134 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 RNF19AQ9NV58 838 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 DNAJC12Q9UKB3 198 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 RIPK3Q9Y572 518 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MYO5AQ9Y4I1 1855 aaKnown RBP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ESYT2A0FGR8 921 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CAND2O75155 1236 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SNUPNO95149 360 aaKnown RBP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 RPA1P27694 616 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 HDLBPQ00341 1268 aaKnown RBP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 HAUS6Q7Z4H7 955 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 TRIM50Q86XT4 487 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 NSUN6Q8TEA1 469 aaKnown RBP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 WNK4Q96J92 1243 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 RAB21Q9UL25 225 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 NOVA2Q9UNW9 492 aaKnown RBP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CD2APQ9Y5K6 639 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 VIL1P09327 827 aaKnown RBP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CCND2P30279 289 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MXI1P50539 228 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ZNF211Q13398 564 aaPredicted RBP11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 DRP2Q13474 957 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 C6orf163Q5TEZ5 329 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 HOMEZQ8IX15 550 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CCDC26Q8TAB7 109 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 STMN2Q93045 179 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 KRT12Q99456 494 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 WDR18Q9BV38 432 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 USH1CQ9Y6N9 552 aa11.56□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 KLRC4O43908 158 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ATP9AO75110 1047 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CALCAP01258 141 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MYL1P05976 194 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PDHA1P08559 390 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 H2AFZP0C0S5 128 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 TRPC3Q13507 836 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 H2AFVQ71UI9 128 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SPDYE1Q8NFV5 336 aaPredicted RBP11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 KCNV2Q8TDN2 545 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ARHGEF2Q92974 986 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms