RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.94□□□□□ -0.5
COL6A3-214ENST00000493608 SUCLA2Q9P2R7 463 aaPredicted RBP11.94□□□□□ -0.5
COL6A3-214ENST00000493608 PCDHA12Q9UN75 941 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 PCDHB3Q9Y5E6 796 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 XIRP2A4UGR9 3374 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 NEMFO60524 1076 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 MAFO75444 373 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-214ENST00000493608 BMP1P13497 986 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 DARSP14868 501 aaKnown RBP11.93□□□□□ -0.5
COL6A3-214ENST00000493608 MCM7P33993 719 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 RBM25P49756 843 aaKnown RBP11.93□□□□□ -0.5
COL6A3-214ENST00000493608 DNM2P50570 870 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 SAFBQ15424 915 aaKnown RBP eCLIP11.93□□□□□ -0.5
COL6A3-214ENST00000493608 PTPROQ16827 1216 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 BLOC1S3Q6QNY0 202 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 CMTR2Q8IYT2 770 aaKnown RBP11.93□□□□□ -0.5
COL6A3-214ENST00000493608 FAM184AQ8NB25 1140 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 RNF169Q8NCN4 708 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 IL27Q8NEV9 243 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 TMEM143Q96AN5 459 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 NLRP4Q96MN2 994 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 NECAB3Q96P71 396 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-214ENST00000493608 EIF2AK1Q9BQI3 630 aaKnown RBP11.93□□□□□ -0.5
COL6A3-214ENST00000493608 TMEM60Q9H2L4 133 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 C1orf112Q9NSG2 853 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 TTC28Q96AY4 2481 aa11.93□□□□□ -0.5
COL6A3-214ENST00000493608 PLXNA4Q9HCM2 1894 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 C5orf67F2Z3F1 127 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 ACTN4O43707 911 aaKnown RBP11.92□□□□□ -0.5
COL6A3-214ENST00000493608 DKC1O60832 514 aaKnown RBP eCLIP11.92□□□□□ -0.5
COL6A3-214ENST00000493608 SLITRK3O94933 977 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 RB1P06400 928 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 SRGAP2CP0DJJ0 459 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 ZSCAN20P17040 1043 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-214ENST00000493608 YWHABP31946 246 aaKnown RBP11.92□□□□□ -0.5
COL6A3-214ENST00000493608 FAM189BP81408 668 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 ZNF174Q15697 407 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 LONRF3Q496Y0 759 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 XKR9Q5GH70 373 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 TCEAL5Q5H9L2 206 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 SPOUT1Q5T280 376 aaKnown RBP11.92□□□□□ -0.5
COL6A3-214ENST00000493608 EP400NLQ6ZTU2 488 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 ADAMTS19Q8TE59 1207 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 GCOM2Q9BZD3 368 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-214ENST00000493608 ATP6V0A4Q9HBG4 840 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 SH2B1Q9NRF2 756 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-214ENST00000493608 COG5Q9UP83 839 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 PLAGL2Q9UPG8 496 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 RWDD3Q9Y3V2 267 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 ARID2Q68CP9 1835 aa11.92□□□□□ -0.5
COL6A3-214ENST00000493608 CD2BP2O95400 341 aaKnown RBP11.91□□□□□ -0.5
COL6A3-214ENST00000493608 ITGB1P05556 798 aa11.91□□□□□ -0.5
COL6A3-214ENST00000493608 DNAJB1P25685 340 aa11.91□□□□□ -0.5
COL6A3-214ENST00000493608 POLGP54098 1239 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-214ENST00000493608 HMGN5P82970 282 aaKnown RBP11.91□□□□□ -0.5
COL6A3-214ENST00000493608 GNL2Q13823 731 aaKnown RBP11.91□□□□□ -0.5
COL6A3-214ENST00000493608 RABEP1Q15276 862 aa11.91□□□□□ -0.5
COL6A3-214ENST00000493608 OTUD6AQ7L8S5 288 aa11.91□□□□□ -0.5
COL6A3-214ENST00000493608 C4orf19Q8IY42 314 aa11.91□□□□□ -0.5
COL6A3-214ENST00000493608 KLHL23Q8NBE8 558 aa11.91□□□□□ -0.5
COL6A3-214ENST00000493608 FBXO18Q8NFZ0 1043 aa11.91□□□□□ -0.5
COL6A3-214ENST00000493608 MTMR9Q96QG7 549 aa11.91□□□□□ -0.5
COL6A3-214ENST00000493608 C11orf84Q9BUA3 381 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-214ENST00000493608 IGFLR1Q9H665 355 aa11.91□□□□□ -0.5
COL6A3-214ENST00000493608 ZSWIM4Q9H7M6 989 aa11.91□□□□□ -0.5
COL6A3-214ENST00000493608 UBE2ZQ9H832 354 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-214ENST00000493608 TYW1Q9NV66 732 aaKnown RBP11.91□□□□□ -0.5
COL6A3-214ENST00000493608 TMEM161AQ9NX61 479 aa11.91□□□□□ -0.5
COL6A3-214ENST00000493608 NCOR1O75376 2440 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-214ENST00000493608 CFHP08603 1231 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 KCNA5P22460 613 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 GTF2F1P35269 517 aaKnown RBP eCLIP11.9□□□□□ -0.5
COL6A3-214ENST00000493608 TECP42680 631 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 CAMK1Q14012 370 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 AAK1Q2M2I8 961 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 ECHDC2Q86YB7 292 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 SPPL3Q8TCT6 385 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 PIGOQ8TEQ8 1089 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 PRPF31Q8WWY3 499 aaKnown RBP11.9□□□□□ -0.5
COL6A3-214ENST00000493608 SLC7A3Q8WY07 619 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 UHRF1Q96T88 793 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-214ENST00000493608 HSD17B14Q9BPX1 270 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 PLVAPQ9BX97 442 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 FOXP1Q9H334 677 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-214ENST00000493608 NSUN3Q9H649 340 aaKnown RBP11.9□□□□□ -0.5
COL6A3-214ENST00000493608 DHX33Q9H6R0 707 aaKnown RBP11.9□□□□□ -0.5
COL6A3-214ENST00000493608 RNF19AQ9NV58 838 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 COL4A3BPQ9Y5P4 624 aa11.9□□□□□ -0.5
COL6A3-214ENST00000493608 H3BQ06 376 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-214ENST00000493608 IRS1P35568 1242 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 PBX3P40426 434 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 CDC42EP1Q00587 391 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 LAMTOR4Q0VGL1 99 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 EMC2Q15006 297 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 KMT5BQ4FZB7 885 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 TIGD5Q53EQ6 642 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 TTC38Q5R3I4 469 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 LRRC55Q6ZSA7 311 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 CATSPER4Q7RTX7 472 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms