RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CXCR5P32302 372 aa22.96■■□□□ 1.27
CCDC88B-208ENST00000492980 SMTNP53814 917 aa22.96■■□□□ 1.27
CCDC88B-208ENST00000492980 SP4Q02446 784 aa22.96■■□□□ 1.27
CCDC88B-208ENST00000492980 ITIH3Q06033 890 aa22.96■■□□□ 1.27
CCDC88B-208ENST00000492980 PPP3CAQ08209 521 aa22.96■■□□□ 1.27
CCDC88B-208ENST00000492980 LBX2Q6XYB7 198 aa22.96■■□□□ 1.27
CCDC88B-208ENST00000492980 MAP4K3Q8IVH8 894 aa22.96■■□□□ 1.27
CCDC88B-208ENST00000492980 PLEKHO2Q8TD55 490 aa22.96■■□□□ 1.27
CCDC88B-208ENST00000492980 KIFAP3Q92845 792 aa22.96■■□□□ 1.27
CCDC88B-208ENST00000492980 EXOC7Q9UPT5 735 aa22.96■■□□□ 1.27
CCDC88B-208ENST00000492980 TARSL2A2RTX5 802 aaKnown RBP22.95■■□□□ 1.26
CCDC88B-208ENST00000492980 GRID2IPA4D2P6 1211 aa22.95■■□□□ 1.26
CCDC88B-208ENST00000492980 N4BP1O75113 896 aaKnown RBP22.95■■□□□ 1.26
CCDC88B-208ENST00000492980 SOX10P56693 466 aa22.95■■□□□ 1.26
CCDC88B-208ENST00000492980 PHLDB3Q6NSJ2 640 aa22.95■■□□□ 1.26
CCDC88B-208ENST00000492980 DNERQ8NFT8 737 aa22.95■■□□□ 1.26
CCDC88B-208ENST00000492980 SPIRE2Q8WWL2 714 aa22.95■■□□□ 1.26
CCDC88B-208ENST00000492980 PFASO15067 1338 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 ANKRD63C9JTQ0 380 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 P4HA2O15460 535 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 SORBS3O60504 671 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 PEX10O60683 326 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 RFX1P22670 979 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 PRKCEQ02156 737 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 DNAAF5Q86Y56 855 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 LNX1Q8TBB1 728 aaPredicted RBP22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 NTPCRQ9BSD7 190 aaKnown RBP22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 C17orf75Q9HAS0 396 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 KMT5AQ9NQR1 393 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 PDLIM7Q9NR12 457 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 IGSF9BQ9UPX0 1349 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 DENND3A2RUS2 1198 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 MAP2K7O14733 419 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 FTCDO95954 541 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 ADRB2P07550 413 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 ADSSP30520 456 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 SP2Q02086 613 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 CNTN2Q02246 1040 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 MEI1Q5TIA1 1274 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 MMGT1Q8N4V1 131 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 SLC30A5Q8TAD4 765 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 SYT11Q9BT88 431 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 ST7Q9NRC1 585 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 BTBD7Q9P203 1132 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 SEPT9Q9UHD8 586 aaPredicted RBP22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 CSADQ9Y600 493 aa22.94■■□□□ 1.26
CCDC88B-208ENST00000492980 DGAT1O75907 488 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 SUPT20HL2P0C7V6 817 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 ICAM3P32942 547 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 GCLMP48507 274 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 MCCD1P59942 119 aaPredicted RBP22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 FSTL1Q12841 308 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 STXBP2Q15833 593 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 EPC2Q52LR7 807 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 MIS18BP1Q6P0N0 1132 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 ANKRD35Q8N283 1001 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 SPATA4Q8NEY3 305 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 DCPSQ96C86 337 aaKnown RBP22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 UBXN6Q9BZV1 441 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 PRDM10Q9NQV6 1147 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 XPNPEP1Q9NQW7 623 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 L1RE1Q9UN81 338 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 EIF3JO75822 258 aaKnown RBP22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 FMNL3Q8IVF7 1028 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 SULF1Q8IWU6 871 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 MCPH1Q8NEM0 835 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 CYP26B1Q9NR63 512 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 EHD2Q9NZN4 543 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 INTUQ9ULD6 942 aa22.93■■□□□ 1.26
CCDC88B-208ENST00000492980 GOLGA8IPA6NC78 632 aa22.92■■□□□ 1.26
CCDC88B-208ENST00000492980 GOLGA8JA6NMD2 632 aa22.92■■□□□ 1.26
CCDC88B-208ENST00000492980 CETN1Q12798 172 aa22.92■■□□□ 1.26
CCDC88B-208ENST00000492980 ARHGAP44Q17R89 818 aa22.92■■□□□ 1.26
CCDC88B-208ENST00000492980 RIOX2Q8IUF8 465 aa22.92■■□□□ 1.26
CCDC88B-208ENST00000492980 U2AF1L4Q8WU68 220 aaKnown RBP22.92■■□□□ 1.26
CCDC88B-208ENST00000492980 SMARCAL1Q9NZC9 954 aa22.92■■□□□ 1.26
CCDC88B-208ENST00000492980 MYH9P35579 1960 aaKnown RBP22.92■■□□□ 1.26
CCDC88B-208ENST00000492980 H2AFZP0C0S5 128 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 CNGA1P29973 690 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 RTP1P59025 263 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 CCDC181Q5TID7 509 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 H2AFVQ71UI9 128 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 CBWD2Q8IUF1 395 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 ATP6V0A4Q9HBG4 840 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 ADGRA3Q8IWK6 1321 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 PMM2O15305 246 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 MCM3P25205 808 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 ALDH5A1P51649 535 aaPredicted RBP22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 SNRNP35Q16560 246 aaKnown RBP22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 SLC39A4Q6P5W5 647 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 HDXQ7Z353 690 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 ARHGEF19Q8IW93 802 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 SUGCTQ9HAC7 445 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 FBXO40Q9UH90 709 aa22.91■■□□□ 1.26
CCDC88B-208ENST00000492980 LRRN2O75325 713 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 CCDC172P0C7W6 258 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 PAFAH1B1P43034 410 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 KIF22Q14807 665 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 IFI16Q16666 785 aaKnown RBP22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 XKR3Q5GH77 459 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms