RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 KIAA0753Q2KHM9 967 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 MAP3K21Q5TCX8 1036 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 SLC9A9Q8IVB4 645 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 C12orf56Q8IXR9 622 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 LINC01465Q8N7H1 131 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 NOC4LQ9BVI4 516 aaKnown RBP23.74■■□□□ 1.39
SMC4-221ENST00000489573 IMPACTQ9P2X3 320 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 MYADML2A6NDP7 307 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 RRN3P2A6NIE6 340 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 HAS3O00219 553 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 NKX3-2P78367 333 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 LAMTOR4Q0VGL1 99 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 MTHFD1LQ6UB35 978 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 TAS1R3Q7RTX0 852 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 ZBTB10Q96DT7 871 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 DMAC2Q9NW81 257 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 PHLPP2Q6ZVD8 1323 aa23.73■■□□□ 1.39
SMC4-221ENST00000489573 PES1O00541 588 aaKnown RBP23.73■■□□□ 1.39
SMC4-221ENST00000489573 SMIM10L2AP0DMW4 78 aa23.73■■□□□ 1.39
SMC4-221ENST00000489573 SMIM10L2BP0DMW5 78 aa23.73■■□□□ 1.39
SMC4-221ENST00000489573 EPB41P11171 864 aaKnown RBP23.73■■□□□ 1.39
SMC4-221ENST00000489573 STRN3Q13033 797 aa23.73■■□□□ 1.39
SMC4-221ENST00000489573 TFDP1Q14186 410 aa23.73■■□□□ 1.39
SMC4-221ENST00000489573 MIIPQ5JXC2 388 aa23.73■■□□□ 1.39
SMC4-221ENST00000489573 CEP135Q66GS9 1140 aa23.73■■□□□ 1.39
SMC4-221ENST00000489573 FRMD5Q7Z6J6 570 aa23.73■■□□□ 1.39
SMC4-221ENST00000489573 TMEM174Q8WUU8 243 aa23.73■■□□□ 1.39
SMC4-221ENST00000489573 TMEM134Q9H6X4 195 aa23.73■■□□□ 1.39
SMC4-221ENST00000489573 NRCAMQ92823 1304 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 ASAP2O43150 1006 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 AKAP3O75969 853 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 TMOD1P28289 359 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 PBX1P40424 430 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 CYP2J2P51589 502 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 CHMP4BP1P59074 171 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 PURAQ00577 322 aaKnown RBP23.72■■□□□ 1.39
SMC4-221ENST00000489573 PTPN21Q16825 1174 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 VWA3BQ502W6 1294 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 HS1BP3Q53T59 392 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 CDCA2Q69YH5 1023 aaPredicted RBP23.72■■□□□ 1.39
SMC4-221ENST00000489573 RHPN2Q8IUC4 686 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 SLAIN1Q8ND83 568 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 MKNK1Q9BUB5 465 aa23.72■■□□□ 1.39
SMC4-221ENST00000489573 ZEB2O60315 1214 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 PGK1P00558 417 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 EFNA5P52803 228 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 UBXN1Q04323 297 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 GNASQ5JWF2 1037 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 MARCH8Q5T0T0 291 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 SPECC1LQ69YQ0 1117 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 ARMCX5Q6P1M9 558 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 CCDC186Q7Z3E2 898 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 TRIM59Q8IWR1 403 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 ZBTB8OSQ8IWT0 167 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 RNF149Q8NC42 400 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 LMBR1Q8WVP7 490 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 C2orf40Q9H1Z8 148 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 METTL14Q9HCE5 456 aaKnown RBP23.71■■□□□ 1.39
SMC4-221ENST00000489573 XPNPEP3Q9NQH7 507 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 SETD4Q9NVD3 440 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 TSKSQ9UJT2 592 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 SIP14410 1827 aa23.71■■□□□ 1.39
SMC4-221ENST00000489573 TISP43B9A030 160 aa23.7■■□□□ 1.38
SMC4-221ENST00000489573 K7ERI5 159 aa23.7■■□□□ 1.38
SMC4-221ENST00000489573 ADAMTS4O75173 837 aa23.7■■□□□ 1.38
SMC4-221ENST00000489573 SRGAP2CP0DJJ0 459 aa23.7■■□□□ 1.38
SMC4-221ENST00000489573 PSMC2P35998 433 aaKnown RBP23.7■■□□□ 1.38
SMC4-221ENST00000489573 CASP4P49662 377 aa23.7■■□□□ 1.38
SMC4-221ENST00000489573 BICD1Q96G01 975 aa23.7■■□□□ 1.38
SMC4-221ENST00000489573 MTG1Q9BT17 334 aaPredicted RBP23.7■■□□□ 1.38
SMC4-221ENST00000489573 NDST4Q9H3R1 872 aa23.7■■□□□ 1.38
SMC4-221ENST00000489573 ARMCX3Q9UH62 379 aaPredicted RBP23.7■■□□□ 1.38
SMC4-221ENST00000489573 FRMD4BQ9Y2L6 1034 aa23.7■■□□□ 1.38
SMC4-221ENST00000489573 ITIH6Q6UXX5 1313 aa23.7■■□□□ 1.38
SMC4-221ENST00000489573 HNRNPDLO14979 420 aaKnown RBP23.69■■□□□ 1.38
SMC4-221ENST00000489573 FKBP15Q5T1M5 1219 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 FAM186BQ8IYM0 893 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 NLRP4Q96MN2 994 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 MAP7D2Q96T17 732 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 CBWD1Q9BRT8 395 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 TRIM17Q9Y577 477 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.69■■□□□ 1.381e-8■■■■■ 54.3
SMC4-221ENST00000489573 A0A1W2PQC6 194 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 ANKRD63C9JTQ0 380 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 EXOC3O60645 756 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 PIGRP01833 764 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 INHAP05111 366 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 GJB1P08034 283 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 GSDMDP57764 484 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 NFRKBQ6P4R8 1299 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 SLC39A4Q6P5W5 647 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 HSPBP1Q9NZL4 362 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 DDX20Q9UHI6 824 aaKnown RBP23.69■■□□□ 1.38
SMC4-221ENST00000489573 AKT3Q9Y243 479 aa23.69■■□□□ 1.38
SMC4-221ENST00000489573 LIG4P49917 911 aa23.68■■□□□ 1.38
SMC4-221ENST00000489573 PPP2R3AQ06190 1150 aa23.68■■□□□ 1.38
SMC4-221ENST00000489573 XXYLT1Q8NBI6 393 aa23.68■■□□□ 1.38
SMC4-221ENST00000489573 CCDC113Q9H0I3 377 aa23.68■■□□□ 1.38
SMC4-221ENST00000489573 PCIF1Q9H4Z3 704 aa23.68■■□□□ 1.38
SMC4-221ENST00000489573 MBLAC1A4D2B0 266 aaPredicted RBP23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms