RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 DBF4BQ8NFT6 615 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 BSNDQ8WZ55 320 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 APBB2Q92870 758 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 TOP1MTQ969P6 601 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 FAM167AQ96KS9 214 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 FAM161BQ96MY7 647 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 SLC9A7Q96T83 725 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 CXCL16Q9H2A7 254 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 ADAMTS10Q9H324 1103 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 SEMA6BQ9H3T3 888 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 DHX33Q9H6R0 707 aaKnown RBP6.42□□□□□ -1.38
CUX1-208ENST00000485792 MINDY3Q9H8M7 445 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 BRMS1Q9HCU9 246 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 PRDM6Q9NQX0 595 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 PCDHA12Q9UN75 941 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 CEP131Q9UPN4 1083 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 NOD1Q9Y239 953 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 ZDHHC9Q9Y397 364 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 PCDHA11Q9Y5I1 949 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 CDY2AQ9Y6F7 541 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 PLXNA3P51805 1871 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 TTC28Q96AY4 2481 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 ADGRA3Q8IWK6 1321 aa6.42□□□□□ -1.38
CUX1-208ENST00000485792 A0A087X0B3 334 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 RFXAPO00287 272 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 BACH1O14867 736 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 MEFVO15553 781 aaPredicted RBP6.41□□□□□ -1.38
CUX1-208ENST00000485792 ZBTB24O43167 697 aaPredicted RBP6.41□□□□□ -1.38
CUX1-208ENST00000485792 NEMFO60524 1076 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 CSDE1O75534 798 aaKnown RBP6.41□□□□□ -1.38
CUX1-208ENST00000485792 GJB5O95377 273 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 VTNP04004 478 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 CDC25AP30304 524 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 CYP4A11Q02928 519 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 POU5F1BQ06416 359 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 TRIM29Q14134 588 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 CTTNQ14247 550 aaKnown RBP6.41□□□□□ -1.38
CUX1-208ENST00000485792 DSC3Q14574 896 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 PTPAQ15257 358 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 CALCRLQ16602 461 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 ZNF697Q5TEC3 545 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 TSHZ1Q6ZSZ6 1077 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 USP49Q70CQ1 688 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 TRMT1LQ7Z2T5 733 aaKnown RBP6.41□□□□□ -1.38
CUX1-208ENST00000485792 MIER3Q7Z3K6 550 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 ZNF598Q86UK7 904 aaKnown RBP6.41□□□□□ -1.38
CUX1-208ENST00000485792 FAM228AQ86W67 206 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 KSR1Q8IVT5 923 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 HERC6Q8IVU3 1022 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 ZNF689Q96CS4 500 aaPredicted RBP6.41□□□□□ -1.38
CUX1-208ENST00000485792 POM121Q96HA1 1249 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 DYDC2Q96IM9 177 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 PNMA5Q96PV4 448 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 POLR3CQ9BUI4 534 aaPredicted RBP6.41□□□□□ -1.38
CUX1-208ENST00000485792 TRAIPQ9BWF2 469 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 CELF4Q9BZC1 486 aaKnown RBP6.41□□□□□ -1.38
CUX1-208ENST00000485792 FAM49AQ9H0Q0 323 aaPredicted RBP6.41□□□□□ -1.38
CUX1-208ENST00000485792 MTIF3Q9H2K0 278 aaKnown RBP6.41□□□□□ -1.38
CUX1-208ENST00000485792 NKX2-4Q9H2Z4 354 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 TTC12Q9H892 705 aaPredicted RBP6.41□□□□□ -1.38
CUX1-208ENST00000485792 GDPD2Q9HCC8 539 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 ERVK-5Q9HDB9 667 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 PRM3Q9NNZ6 103 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 NRBP2Q9NSY0 501 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 FKBPLQ9UIM3 349 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 MTMR6Q9Y217 621 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 SLC4A7Q9Y6M7 1214 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 DENND4AQ7Z401 1863 aa6.41□□□□□ -1.38
CUX1-208ENST00000485792 DENND4CQ5VZ89 1909 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 C2orf16Q68DN1 1984 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 LAD1O00515 517 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 NRG2O14511 850 aaPredicted RBP6.4□□□□□ -1.38
CUX1-208ENST00000485792 ENPP3O14638 875 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 CA3P07451 260 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 ACTN1P12814 892 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 ATP2A2P16615 1042 aaKnown RBP6.4□□□□□ -1.38
CUX1-208ENST00000485792 RPA1P27694 616 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 CD52P31358 61 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 MCM7P33993 719 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 DDIT3P35638 169 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 RPIAP49247 311 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 AFF1P51825 1210 aaKnown RBP6.4□□□□□ -1.38
CUX1-208ENST00000485792 CRYBB1P53674 252 aaPredicted RBP6.4□□□□□ -1.38
CUX1-208ENST00000485792 ATP2C1P98194 919 aaPredicted RBP6.4□□□□□ -1.38
CUX1-208ENST00000485792 CDC42EP1Q00587 391 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 MAPK7Q13164 816 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 IKBKEQ14164 716 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 SAFBQ15424 915 aaKnown RBP eCLIP6.4□□□□□ -1.38
CUX1-208ENST00000485792 ZNF174Q15697 407 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 RAB30Q15771 203 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 RILPL1Q5EBL4 403 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 HYIQ5T013 277 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 IER5Q5VY09 327 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 Q6ZNB5 142 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 RSPH3Q86UC2 560 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 CATSPER3Q86XQ3 398 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 DAW1Q8N136 415 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 DEFB123Q8N688 67 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 ARMC2Q8NEN0 867 aa6.4□□□□□ -1.38
CUX1-208ENST00000485792 NEK9Q8TD19 979 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms