RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 LRRC14Q15048 493 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 MAGED2Q9UNF1 606 aaPredicted RBP20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 PLEKHG2Q9H7P9 1386 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 GOLGA8IPA6NC78 632 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 GOLGA8JA6NMD2 632 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 FUT8Q9BYC5 575 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 PPCSQ9HAB8 311 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 FDPSP14324 419 aaKnown RBP20.27■□□□□ 0.83
CCDC88B-204ENST00000463837 AGGF1Q8N302 714 aaeCLIP20.27■□□□□ 0.83
CCDC88B-204ENST00000463837 CCNYQ8ND76 341 aa20.27■□□□□ 0.83
CCDC88B-204ENST00000463837 NUDCD1Q96RS6 583 aa20.27■□□□□ 0.83
CCDC88B-204ENST00000463837 PP2D1A8MPX8 630 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 CASP2P42575 452 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 TFAMQ00059 246 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 C1orf146Q5VVC0 180 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 ATP11CQ8NB49 1132 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 HEMGNQ9BXL5 484 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 YY1AP1Q9H869 796 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 CYP26B1Q9NR63 512 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 FAM107AO95990 144 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 VAMP7P51809 220 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 PDCD2Q16342 344 aaPredicted RBP20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 TEDDM1Q5T9Z0 273 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 OR6B2Q6IFH4 312 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 RHOT1Q8IXI2 618 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 SYN2Q92777 582 aaPredicted RBP20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 XPO6Q96QU8 1125 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 DDX56Q9NY93 547 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 IP6K2Q9UHH9 426 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 SMG5Q9UPR3 1016 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 UTYO14607 1347 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 CCDC22O60826 627 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 HSPA4LO95757 839 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 HLFQ16534 295 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 SH2D3CQ8N5H7 860 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 NDE1Q9NXR1 346 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 POTEB3A0JP26 581 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 POTECB2RU33 542 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 WDR46O15213 610 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 CTDNEP1O95476 244 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 PYGBP11216 843 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 POTEBQ6S5H4 581 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 GIMAP8Q8ND71 665 aaPredicted RBP20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 STAMBPL1Q96FJ0 436 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 SH3GL3Q99963 347 aa20.26■□□□□ 0.83
CCDC88B-204ENST00000463837 PITPNM2Q9BZ72 1349 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 S100BP04271 92 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 SLC1A1P43005 524 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 THOC5Q13769 683 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 AP5M1Q9H0R1 490 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 CLRN2A0PK11 232 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 KPNA7A9QM74 516 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 PHF2O75151 1096 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 SPOPLQ6IQ16 392 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 TEX9Q8N6V9 391 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 SEC16BQ96JE7 1060 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 USP15Q9Y4E8 981 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 KIAA1210Q9ULL0 1709 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 TBXAS1P24557 533 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 MCPH1Q8NEM0 835 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 ISCUQ9H1K1 167 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 TRIM33Q9UPN9 1127 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 LOC102724159A0A0B4J2E5 919 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 KRT14P02533 472 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 PEX3P56589 373 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 PWP2Q15269 919 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 RIN2Q8WYP3 895 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 CCDC138Q96M89 665 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 MSTO1Q9BUK6 570 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 OSBPL1AQ9BXW6 950 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 COA1Q9GZY4 146 aa20.25■□□□□ 0.83
CCDC88B-204ENST00000463837 GDF11O95390 407 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 CD58P19256 250 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 ELF1P32519 619 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 GCLMP48507 274 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 IRX1P78414 480 aaPredicted RBP20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 SESTD1Q86VW0 696 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 RTKN2Q8IZC4 609 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 FAM129AQ9BZQ8 928 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 ROPN1BQ9BZX4 212 aaPredicted RBP20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 ROPN1Q9HAT0 212 aaPredicted RBP20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 INO80Q9ULG1 1556 aaPredicted RBP20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 CCND1P24385 295 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 PADI6Q6TGC4 694 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 GLYCTKQ8IVS8 523 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 GCOM2Q9BZD3 368 aaPredicted RBP20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 DCTN4Q9UJW0 460 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 PTPRUQ92729 1446 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 NMT2O60551 498 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 RTN2O75298 545 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 CHN1P15882 459 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 BBS5Q8N3I7 341 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 SRBD1Q8N5C6 995 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 PIGOQ8TEQ8 1089 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 AGPAT1Q99943 283 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 FOXP3Q9BZS1 431 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 CXorf56Q9H5V9 222 aa20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 RBM12Q9NTZ6 932 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-204ENST00000463837 NPR1P16066 1061 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 EEF1B2P24534 225 aaKnown RBP20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms