RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 FEZ1Q99689 392 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 BACH2Q9BYV9 841 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 KIAA1683Q9H0B3 1180 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.72□□□□□ -1.01
USP54-208ENST00000461520 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.72□□□□□ -1.01
USP54-208ENST00000461520 DCP1AQ9NPI6 582 aaPredicted RBP8.72□□□□□ -1.01
USP54-208ENST00000461520 PAG1Q9NWQ8 432 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 MCM9Q9NXL9 1143 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 RABGAP1Q9Y3P9 1069 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 LAMA3Q16787 3333 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 RPTORQ8N122 1335 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 CYP2B6P20813 491 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 ADD2P35612 726 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 ZNF165P49910 485 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 LBX2Q6XYB7 198 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 CATSPERGQ6ZRH7 1159 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 GPR142Q7Z601 462 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 CCAR1Q8IX12 1150 aaKnown RBP8.71□□□□□ -1.02
USP54-208ENST00000461520 LCORLQ8N3X6 602 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 OXR1Q8N573 874 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 SLC17A8Q8NDX2 589 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 SDR42E1Q8WUS8 393 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 TRIB2Q92519 343 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 HAUS7Q99871 368 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 PAGR1Q9BTK6 254 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 SPON2Q9BUD6 331 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 NT5C1AQ9BXI3 368 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 HDAC8Q9BY41 377 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 LRRCC1Q9C099 1032 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.71□□□□□ -1.02
USP54-208ENST00000461520 BOLA2Q9H3K6 86 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 SWAP70Q9UH65 585 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 MYH1P12882 1939 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 CUL9Q8IWT3 2517 aa8.71□□□□□ -1.02
USP54-208ENST00000461520 KRT1P04264 644 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 C1QTNF9P0C862 333 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 VCAM1P19320 739 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 GUCY1A2P33402 732 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 RGS2P41220 211 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 CCNA1P78396 465 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 UBE3CQ15386 1083 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 ZYXQ15942 572 aaKnown RBP8.7□□□□□ -1.02
USP54-208ENST00000461520 MAP3K21Q5TCX8 1036 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 C20orf194Q5TEA3 1177 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 NECAB2Q7Z6G3 386 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 PLEKHH3Q7Z736 793 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 CILP2Q8IUL8 1156 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 SLITRK4Q8IW52 837 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 ENOX1Q8TC92 643 aaKnown RBP8.7□□□□□ -1.02
USP54-208ENST00000461520 ACER1Q8TDN7 264 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 SYTL5Q8TDW5 730 aaPredicted RBP8.7□□□□□ -1.02
USP54-208ENST00000461520 USP6NLQ92738 828 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 EDC3Q96F86 508 aaKnown RBP8.7□□□□□ -1.02
USP54-208ENST00000461520 TCTN2Q96GX1 697 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 PPP1R16BQ96T49 567 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 PORCNQ9H237 461 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 EPB41L4BQ9H329 900 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 ATP8A2Q9NTI2 1148 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 STAP2Q9UGK3 403 aa8.7□□□□□ -1.02
USP54-208ENST00000461520 DDX60LQ5H9U9 1706 aaKnown RBP8.7□□□□□ -1.02
USP54-208ENST00000461520 A0A1W2PPC1 479 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 FITM1A5D6W6 292 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 MPHOSPH10O00566 681 aaKnown RBP8.69□□□□□ -1.02
USP54-208ENST00000461520 PEX10O60683 326 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 CLEC3AO75596 197 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 CNMDO75829 334 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 GLRX3O76003 335 aaKnown RBP8.69□□□□□ -1.02
USP54-208ENST00000461520 MBD4O95243 580 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 TSPAN15O95858 294 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 NME1P15531 152 aaKnown RBP8.69□□□□□ -1.02
USP54-208ENST00000461520 ZKSCAN1P17029 563 aaPredicted RBP8.69□□□□□ -1.02
USP54-208ENST00000461520 RPL10P27635 214 aaKnown RBP8.69□□□□□ -1.02
USP54-208ENST00000461520 ZNF76P36508 570 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 GALK1P51570 392 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 SEPT2Q15019 361 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 ZSCAN25Q6NSZ9 544 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 TMEM179Q6ZVK1 233 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 AMOTL1Q8IY63 956 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 PAWRQ96IZ0 340 aaKnown RBP8.69□□□□□ -1.02
USP54-208ENST00000461520 CCDC17Q96LX7 622 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 APBA2Q99767 749 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 FOXP3Q9BZS1 431 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 PRDM14Q9GZV8 571 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 RPAP3Q9H6T3 665 aaPredicted RBP8.69□□□□□ -1.02
USP54-208ENST00000461520 ARMT1Q9H993 441 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 CWC22Q9HCG8 908 aaKnown RBP8.69□□□□□ -1.02
USP54-208ENST00000461520 OGDHLQ9ULD0 1010 aa8.69□□□□□ -1.02
USP54-208ENST00000461520 NAV1Q8NEY1 1877 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 COL6A3P12111 3177 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 A0A1W2PRG0 241 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 PRKAB2O43741 272 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 CACNB2Q08289 660 aaPredicted RBP8.68□□□□□ -1.02
USP54-208ENST00000461520 COG2Q14746 738 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 C12orf60Q5U649 245 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 SPPL2CQ8IUH8 684 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 TMEM192Q8IY95 271 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 LILRA2Q8N149 483 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 DAGLBQ8NCG7 672 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 DIS3LQ8TF46 1054 aaKnown RBP8.68□□□□□ -1.02
USP54-208ENST00000461520 LINC01599Q8WXQ3 324 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms