RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 SMIM10L2BP0DMW5 78 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 ZNF131P52739 623 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 PPFIA1Q13136 1202 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 MFSD10Q14728 455 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 NCAPHQ15003 741 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 GRIK4Q16099 956 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 C1QTNF12Q5T7M4 302 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 TRIML1Q8N9V2 468 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 MLKLQ8NB16 471 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 LSM14AQ8ND56 463 aaKnown RBP11.36□□□□□ -0.59
USP39-210ENST00000459775 U2AF1L4Q8WU68 220 aaKnown RBP11.36□□□□□ -0.59
USP39-210ENST00000459775 NELFBQ8WX92 580 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 UBXN4Q92575 508 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 CCDC94Q9BW85 323 aaPredicted RBP11.36□□□□□ -0.59
USP39-210ENST00000459775 SEMA6BQ9H3T3 888 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 Q9Y3F1 56 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 COL4A3BPQ9Y5P4 624 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 WDR81Q562E7 1941 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 ADGRA3Q8IWK6 1321 aa11.36□□□□□ -0.59
USP39-210ENST00000459775 KIAA0100Q14667 2235 aaKnown RBP11.36□□□□□ -0.59
USP39-210ENST00000459775 HBP1O60381 514 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 MAFO75444 373 aaPredicted RBP11.35□□□□□ -0.59
USP39-210ENST00000459775 GCNT3O95395 438 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 SGPL1O95470 568 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 C22orf31O95567 290 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 GLRA2P23416 452 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 NPTX2P47972 431 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 PSEN2P49810 448 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 TMEM62Q0P6H9 643 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 EFCAB12Q6NXP0 572 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 FAM178BQ8IXR5 827 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 FAM200AQ8TCP9 573 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 LMBR1Q8WVP7 490 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 PRPF31Q8WWY3 499 aaKnown RBP11.35□□□□□ -0.59
USP39-210ENST00000459775 SLC7A3Q8WY07 619 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 DEFB118Q96PH6 123 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 UPF3AQ9H1J1 476 aaKnown RBP11.35□□□□□ -0.59
USP39-210ENST00000459775 HSD3B7Q9H2F3 369 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 GRPEL1Q9HAV7 217 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 HDAC6Q9UBN7 1215 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 ZNF215Q9UL58 517 aaPredicted RBP11.35□□□□□ -0.59
USP39-210ENST00000459775 STXBP5LQ9Y2K9 1186 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 ATP1A3P13637 1013 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 CD151P48509 253 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 ANKRD40Q6AI12 368 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 CCSAPQ6IQ19 270 aaPredicted RBP11.35□□□□□ -0.59
USP39-210ENST00000459775 RUFY4Q6ZNE9 571 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 ANKLE1Q8NAG6 615 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 KLHDC9Q8NEP7 349 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 FAM167AQ96KS9 214 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.35□□□□□ -0.59
USP39-210ENST00000459775 KDM4CQ9H3R0 1056 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 SAMSN1Q9NSI8 373 aaKnown RBP11.35□□□□□ -0.59
USP39-210ENST00000459775 FANCLQ9NW38 375 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 FBXO9Q9UK97 447 aaPredicted RBP11.35□□□□□ -0.59
USP39-210ENST00000459775 ODF2LQ9ULJ1 636 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 GRIN2DO15399 1336 aa11.35□□□□□ -0.59
USP39-210ENST00000459775 MYH9P35579 1960 aaKnown RBP11.34□□□□□ -0.59
USP39-210ENST00000459775 VTNP04004 478 aa11.34□□□□□ -0.59
USP39-210ENST00000459775 SRGAP2CP0DJJ0 459 aa11.34□□□□□ -0.59
USP39-210ENST00000459775 PLS3P13797 630 aa11.34□□□□□ -0.59
USP39-210ENST00000459775 ARL2P36404 184 aa11.34□□□□□ -0.59
USP39-210ENST00000459775 SLC26A2P50443 739 aa11.34□□□□□ -0.59
USP39-210ENST00000459775 PTPN21Q16825 1174 aa11.34□□□□□ -0.59
USP39-210ENST00000459775 ZC3H12AQ5D1E8 599 aaKnown RBP11.34□□□□□ -0.59
USP39-210ENST00000459775 ZNF720Q7Z2F6 126 aa11.34□□□□□ -0.59
USP39-210ENST00000459775 C11orf96Q7Z7L8 435 aa11.34□□□□□ -0.59
USP39-210ENST00000459775 CCDC47Q96A33 483 aaKnown RBP11.34□□□□□ -0.59
USP39-210ENST00000459775 FAM49AQ9H0Q0 323 aaPredicted RBP11.34□□□□□ -0.59
USP39-210ENST00000459775 KCND2Q9NZV8 630 aa11.34□□□□□ -0.59
USP39-210ENST00000459775 IGKV6-21A0A0C4DH24 114 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 TTLL13PA6NNM8 815 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 K7ENM7 598 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 HAS3O00219 553 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 TREHO43280 583 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 EDN1P05305 212 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 BRDTQ58F21 947 aaPredicted RBP11.33□□□□□ -0.6
USP39-210ENST00000459775 FAM47CQ5HY64 1035 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 MTHFD1LQ6UB35 978 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 EPM2AIP1Q7L775 607 aaPredicted RBP11.33□□□□□ -0.6
USP39-210ENST00000459775 RHPN2Q8IUC4 686 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 MYOCDQ8IZQ8 938 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 SPC25Q9HBM1 224 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 SUCLA2Q9P2R7 463 aaPredicted RBP11.33□□□□□ -0.6
USP39-210ENST00000459775 LRRIQ4A6NIV6 560 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 BECN2A8MW95 431 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 SMAPO00193 183 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 PAK1Q13153 545 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 CAPSQ13938 189 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 ICE2Q659A1 982 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 TAS1R3Q7RTX0 852 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 HAUS6Q7Z4H7 955 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 TMEM161BQ8NDZ6 487 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 MCPH1Q8NEM0 835 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 MYCBPQ99417 103 aaPredicted RBP11.33□□□□□ -0.6
USP39-210ENST00000459775 DUSP9Q99956 384 aaKnown RBP11.33□□□□□ -0.6
USP39-210ENST00000459775 MTG1Q9BT17 334 aaPredicted RBP11.33□□□□□ -0.6
USP39-210ENST00000459775 OLFML3Q9NRN5 406 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 LARSQ9P2J5 1176 aaKnown RBP11.33□□□□□ -0.6
USP39-210ENST00000459775 GINS2Q9Y248 185 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms