RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 FAM117AQ9C073 453 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 BHMT2Q9H2M3 363 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 C17orf75Q9HAS0 396 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 USP25Q9UHP3 1055 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 TRPV2Q9Y5S1 764 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 FAM237AA0A1B0GTK4 181 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 EFCAB14O75071 495 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 IQCF3P0C7M6 154 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 PLA2G4BP0C869 781 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 PLCG1P19174 1290 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 GUCY2CP25092 1073 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 CDC25AP30304 524 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 ABCD1P33897 745 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 STAT6P42226 847 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 CRYBB1P53674 252 aaPredicted RBP9.66□□□□□ -0.86
COL28A1-205ENST00000453441 AMPD3Q01432 767 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 KARSQ15046 597 aaKnown RBP9.66□□□□□ -0.86
COL28A1-205ENST00000453441 PPP2R5AQ15172 486 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 ZRSR1Q15695 479 aaKnown RBP9.66□□□□□ -0.86
COL28A1-205ENST00000453441 PSRC1Q6PGN9 363 aaPredicted RBP9.66□□□□□ -0.86
COL28A1-205ENST00000453441 SHC4Q6S5L8 630 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 RUFY4Q6ZNE9 571 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 CLEC17AQ6ZS10 378 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 TRMT1LQ7Z2T5 733 aaKnown RBP9.66□□□□□ -0.86
COL28A1-205ENST00000453441 SH3RF1Q7Z6J0 888 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 TMEM87AQ8NBN3 555 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 DNAJB3Q8WWF6 145 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 LARP4BQ92615 738 aaKnown RBP9.66□□□□□ -0.86
COL28A1-205ENST00000453441 RAD54LQ92698 747 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 APBB2Q92870 758 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 EPSTI1Q96J88 318 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 DRC1Q96MC2 740 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 CELF4Q9BZC1 486 aaKnown RBP9.66□□□□□ -0.86
COL28A1-205ENST00000453441 PPP1R12CQ9BZL4 782 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 INO80BQ9C086 356 aaPredicted RBP9.66□□□□□ -0.86
COL28A1-205ENST00000453441 FAM49AQ9H0Q0 323 aaPredicted RBP9.66□□□□□ -0.86
COL28A1-205ENST00000453441 WNT8AQ9H1J5 351 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 MTIF3Q9H2K0 278 aaKnown RBP9.66□□□□□ -0.86
COL28A1-205ENST00000453441 SUGCTQ9HAC7 445 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 SUCLA2Q9P2R7 463 aaPredicted RBP9.66□□□□□ -0.86
COL28A1-205ENST00000453441 LIMD1Q9UGP4 676 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 AKT3Q9Y243 479 aa9.66□□□□□ -0.86
COL28A1-205ENST00000453441 TMEM150BA6NC51 233 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 E9PMD0 336 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 H0YGN5 161 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 NRG2O14511 850 aaPredicted RBP9.65□□□□□ -0.86
COL28A1-205ENST00000453441 USO1O60763 962 aaKnown RBP9.65□□□□□ -0.86
COL28A1-205ENST00000453441 CXCL10P02778 98 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 MYL1P05976 194 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 ACTN1P12814 892 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 CYP2C18P33260 490 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 CLCN3P51790 818 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 SLC12A3P55017 1021 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 MGAT3Q09327 533 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 SKIV2LQ15477 1246 aaKnown RBP9.65□□□□□ -0.86
COL28A1-205ENST00000453441 ECM1Q16610 540 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 PTPRNQ16849 979 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 ZNF618Q5T7W0 954 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 TRAF7Q6Q0C0 670 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 SV2BQ7L1I2 683 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 LRRC71Q8N4P6 559 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 SLC17A8Q8NDX2 589 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 PPP1R13LQ8WUF5 828 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 MRPS27Q92552 414 aaKnown RBP9.65□□□□□ -0.86
COL28A1-205ENST00000453441 GBP4Q96PP9 640 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 NFKBIZQ9BYH8 718 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 GCOM2Q9BZD3 368 aaPredicted RBP9.65□□□□□ -0.86
COL28A1-205ENST00000453441 C2orf40Q9H1Z8 148 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 TNMDQ9H2S6 317 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 IL23AQ9NPF7 189 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 XPNPEP1Q9NQW7 623 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 KCNH3Q9ULD8 1083 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 ODF2LQ9ULJ1 636 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 ZMYND8Q9ULU4 1186 aaPredicted RBP9.65□□□□□ -0.86
COL28A1-205ENST00000453441 COL4A3BPQ9Y5P4 624 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 CDY2AQ9Y6F7 541 aa9.65□□□□□ -0.86
COL28A1-205ENST00000453441 A0A1W2PPC1 479 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 H0YCG3 227 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 ZBTB39O15060 712 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 LILRB3O75022 631 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 BAIAP3O94812 1187 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 CHRNA1P02708 482 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 SSBP05455 408 aaKnown RBP eCLIP9.64□□□□□ -0.87
COL28A1-205ENST00000453441 EIF4BP23588 611 aaKnown RBP9.64□□□□□ -0.87
COL28A1-205ENST00000453441 BMP8BP34820 402 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 ARL2P36404 184 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 PHKA2P46019 1235 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 GPC3P51654 580 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 PRR20EP86478 221 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 PRR20CP86479 221 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 PRR20DP86480 221 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 PRR20BP86481 221 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 PRR20AP86496 221 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 SPECC1Q5M775 1068 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 RINT1Q6NUQ1 792 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 KANK3Q6NY19 840 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 CNKSR3Q6P9H4 555 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 TSHZ1Q6ZSZ6 1077 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 C1orf186Q6ZWK4 172 aa9.64□□□□□ -0.87
COL28A1-205ENST00000453441 USP49Q70CQ1 688 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms