RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 SPATA31C1P0DKV0 1188 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 RPA1P27694 616 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 PPM1AP35813 382 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 CCT6AP40227 531 aaKnown RBP17.24■□□□□ 0.35
LIMS1-210ENST00000449684 UBE3AQ05086 875 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 PTGDRQ13258 359 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 GLB1LQ6UWU2 654 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 RSPH1Q8WYR4 309 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 TRAIPQ9BWF2 469 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 POLR3FQ9H1D9 316 aaPredicted RBP17.24■□□□□ 0.35
LIMS1-210ENST00000449684 CWH43Q9H720 699 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 XPNPEP1Q9NQW7 623 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 AGPAT5Q9NUQ2 364 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 HCSTQ9UBK5 93 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 MYO7AQ13402 2215 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 SPTBN5Q9NRC6 3674 aaKnown RBP17.24■□□□□ 0.35
LIMS1-210ENST00000449684 H3BQ06 376 aaPredicted RBP17.23■□□□□ 0.35
LIMS1-210ENST00000449684 DNAJB1P25685 340 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 ALDH7A1P49419 539 aaKnown RBP17.23■□□□□ 0.35
LIMS1-210ENST00000449684 RNASELQ05823 741 aaKnown RBP17.23■□□□□ 0.35
LIMS1-210ENST00000449684 PCBP1Q15365 356 aaKnown RBP eCLIP17.23■□□□□ 0.35
LIMS1-210ENST00000449684 PUS10Q3MIT2 529 aaKnown RBP17.23■□□□□ 0.35
LIMS1-210ENST00000449684 LEXMQ3ZCV2 418 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 CLLU1OSQ5K130 101 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 POTEGQ6S5H5 508 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 KCNT2Q6UVM3 1135 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 ZNF598Q86UK7 904 aaKnown RBP17.23■□□□□ 0.35
LIMS1-210ENST00000449684 MCPH1Q8NEM0 835 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 LPPQ93052 612 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 MINDY3Q9H8M7 445 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 TLR9Q9NR96 1032 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 RNF19AQ9NV58 838 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 DBR1Q9UK59 544 aaKnown RBP17.23■□□□□ 0.35
LIMS1-210ENST00000449684 FAM50BQ9Y247 325 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 INPP5FQ9Y2H2 1132 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 PCDHB6Q9Y5E3 794 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 PCDHB2Q9Y5E7 798 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 KIAA1671Q9BY89 1806 aa17.23■□□□□ 0.35
LIMS1-210ENST00000449684 ARID2Q68CP9 1835 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 LAD1O00515 517 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 AXLP30530 894 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 FXR2P51116 673 aaKnown RBP eCLIP17.22■□□□□ 0.35
LIMS1-210ENST00000449684 PTENP60484 403 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 HYAL1Q12794 435 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 PDIA5Q14554 519 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 RILPL1Q5EBL4 403 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 LARP1BQ659C4 914 aaKnown RBP17.22■□□□□ 0.35
LIMS1-210ENST00000449684 PTCRAQ6ISU1 281 aaPredicted RBP17.22■□□□□ 0.35
LIMS1-210ENST00000449684 DTHD1Q6ZMT9 781 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 LRRC55Q6ZSA7 311 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 RBM23Q86U06 439 aaKnown RBP17.22■□□□□ 0.35
LIMS1-210ENST00000449684 URGCPQ8TCY9 931 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 ASAP3Q8TDY4 903 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 NECAB3Q96P71 396 aaPredicted RBP17.22■□□□□ 0.35
LIMS1-210ENST00000449684 TRIM6Q9C030 488 aaPredicted RBP17.22■□□□□ 0.35
LIMS1-210ENST00000449684 ENTPD7Q9NQZ7 604 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 SPG21Q9NZD8 308 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 BRWD1Q9NSI6 2320 aa17.22■□□□□ 0.35
LIMS1-210ENST00000449684 LRRIQ4A6NIV6 560 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 ZNF623O75123 536 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 ATF7P17544 494 aaPredicted RBP17.21■□□□□ 0.35
LIMS1-210ENST00000449684 MUTP22033 750 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 GLRA2P23416 452 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 CA8P35219 290 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 IRS1P35568 1242 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 ARL2P36404 184 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 NDUFV1P49821 464 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 TOB1P50616 345 aaPredicted RBP17.21■□□□□ 0.35
LIMS1-210ENST00000449684 POU5F1BQ06416 359 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 CAPSQ13938 189 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 CAMK1Q14012 370 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 BMS1Q14692 1282 aaKnown RBP17.21■□□□□ 0.35
LIMS1-210ENST00000449684 NOMO2Q5JPE7 1267 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 KRT79Q5XKE5 535 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 PDE12Q6L8Q7 609 aaKnown RBP17.21■□□□□ 0.35
LIMS1-210ENST00000449684 NOTUMQ6P988 496 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 ZBTB8OSQ8IWT0 167 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 C4orf32Q8N8J7 132 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 CNNM3Q8NE01 707 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 SNX29Q8TEQ0 813 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 MRPS27Q92552 414 aaKnown RBP17.21■□□□□ 0.35
LIMS1-210ENST00000449684 TLE6Q9H808 572 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 XIRP2A4UGR9 3374 aa17.21■□□□□ 0.35
LIMS1-210ENST00000449684 CARNS1A5YM72 827 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 ZC3H11AO75152 810 aaKnown RBP eCLIP17.2■□□□□ 0.34
LIMS1-210ENST00000449684 PBX3P40426 434 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 NRIP1P48552 1158 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 PLCB3Q01970 1234 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 TMEM132AQ24JP5 1023 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 PADI6Q6TGC4 694 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 TMC7Q7Z402 723 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 HACE1Q8IYU2 909 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.2■□□□□ 0.34
LIMS1-210ENST00000449684 CCDC51Q96ER9 411 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 TMEM169Q96HH4 297 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 FAM193BQ96PV7 902 aaPredicted RBP17.2■□□□□ 0.34
LIMS1-210ENST00000449684 GBP3Q9H0R5 595 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 UBN1Q9NPG3 1134 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 GPRC5CQ9NQ84 441 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 KIAA1024Q9UPX6 916 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms