RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 AXLP30530 894 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 GTF2F1P35269 517 aaKnown RBP eCLIP7.91□□□□□ -1.149e-7■■■■□ 24.5
VPS41-208ENST00000448833 KRT2P35908 639 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 PHKA2P46019 1235 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 ERVFC1P60507 584 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 RNASELQ05823 741 aaKnown RBP7.91□□□□□ -1.14
VPS41-208ENST00000448833 ITIH3Q06033 890 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 POU5F1BQ06416 359 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 SCRN1Q12765 414 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 TFDP1Q14186 410 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 CLUL1Q15846 466 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 UGCGQ16739 394 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 ELMSAN1Q6PJG2 1045 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 ANO5Q75V66 913 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 CATSPER4Q7RTX7 472 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 BMP8AQ7Z5Y6 402 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 ADGRD2Q7Z7M1 963 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 ZNF598Q86UK7 904 aaKnown RBP7.91□□□□□ -1.14
VPS41-208ENST00000448833 PPFIBP1Q86W92 1011 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 RNF135Q8IUD6 432 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 HACE1Q8IYU2 909 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 MRPL43Q8N983 215 aaKnown RBP7.91□□□□□ -1.14
VPS41-208ENST00000448833 URGCPQ8TCY9 931 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 EDAQ92838 391 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 KHSRPQ92945 711 aaKnown RBP eCLIP7.91□□□□□ -1.14
VPS41-208ENST00000448833 CEP170P1Q96L14 293 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 FAM193BQ96PV7 902 aaPredicted RBP7.91□□□□□ -1.14
VPS41-208ENST00000448833 FDXACB1Q9BRP7 624 aaPredicted RBP7.91□□□□□ -1.14
VPS41-208ENST00000448833 KCNMB3Q9NPA1 279 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 PPP4R2Q9NY27 417 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 ORC3Q9UBD5 711 aaPredicted RBP7.91□□□□□ -1.14
VPS41-208ENST00000448833 DPP7Q9UHL4 492 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 PCDHB8Q9UN66 801 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 PCDHA12Q9UN75 941 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 KCNJ14Q9UNX9 436 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 PIN4Q9Y237 131 aaKnown RBP7.91□□□□□ -1.14
VPS41-208ENST00000448833 SSX2IPQ9Y2D8 614 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 NR2E1Q9Y466 385 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 PCDHB13Q9Y5F0 798 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 COL4A3BPQ9Y5P4 624 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 CNTNAP2Q9UHC6 1331 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 ARID2Q68CP9 1835 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 TDRD15B5MCY1 1934 aaKnown RBP7.91□□□□□ -1.14
VPS41-208ENST00000448833 MYO10Q9HD67 2058 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 FAM86C2PA6NEL3 165 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 PER2O15055 1255 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 NR1I2O75469 434 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 ERLIN2O94905 339 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 CSPG5O95196 566 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 STBD1O95210 358 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 CXCL14O95715 111 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 ALDH2P05091 517 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 YWHABP31946 246 aaKnown RBP7.9□□□□□ -1.14
VPS41-208ENST00000448833 TECP42680 631 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 MTHFRP42898 656 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 BCAR1P56945 870 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 CBX2Q14781 532 aaPredicted RBP7.9□□□□□ -1.14
VPS41-208ENST00000448833 SAFBQ15424 915 aaKnown RBP eCLIP7.9□□□□□ -1.14
VPS41-208ENST00000448833 NPY5RQ15761 445 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 NOMO2Q5JPE7 1267 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 CLLU1OSQ5K130 101 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 PLPP4Q5VZY2 271 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 ANKRD54Q6NXT1 300 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 LRRC55Q6ZSA7 311 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 PIK3AP1Q6ZUJ8 805 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 DDX53Q86TM3 631 aaKnown RBP7.9□□□□□ -1.14
VPS41-208ENST00000448833 SLC39A11Q8N1S5 342 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 HELQQ8TDG4 1101 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 PRPF31Q8WWY3 499 aaKnown RBP7.9□□□□□ -1.14
VPS41-208ENST00000448833 CCDC51Q96ER9 411 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 RIPOR3Q96MK2 946 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 NLRP4Q96MN2 994 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 CCDC43Q96MW1 224 aaKnown RBP7.9□□□□□ -1.14
VPS41-208ENST00000448833 CEP89Q96ST8 783 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 IRF2BPLQ9H1B7 796 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 DHX33Q9H6R0 707 aaKnown RBP7.9□□□□□ -1.14
VPS41-208ENST00000448833 C11orf16Q9NQ32 467 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 AGPAT5Q9NUQ2 364 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 FAM105AQ9NUU6 356 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 DZANK1Q9NVP4 752 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 VAV3Q9UKW4 847 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 USP15Q9Y4E8 981 aaPredicted RBP7.9□□□□□ -1.14
VPS41-208ENST00000448833 IRAK3Q9Y616 596 aa7.9□□□□□ -1.14
VPS41-208ENST00000448833 EML1O00423 815 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 SLC37A4O43826 429 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 DGAT1O75907 488 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 GLP2RO95838 553 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 SRGAP2CP0DJJ0 459 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 LAMTOR4Q0VGL1 99 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 PDAP1Q13442 181 aaKnown RBP7.89□□□□□ -1.15
VPS41-208ENST00000448833 KCNC3Q14003 757 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 CALCRLQ16602 461 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 XKR9Q5GH70 373 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 NCAPH2Q6IBW4 605 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 MRPL10Q7Z7H8 261 aaKnown RBP7.89□□□□□ -1.15
VPS41-208ENST00000448833 TPH2Q8IWU9 490 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 SUGP1Q8IWZ8 645 aaKnown RBP7.89□□□□□ -1.15
VPS41-208ENST00000448833 ZNF579Q8NAF0 562 aaKnown RBP7.89□□□□□ -1.15
VPS41-208ENST00000448833 SUSD6Q92537 303 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 GJA10Q969M2 543 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms