RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 GIPC2Q8TF65 315 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 STRBPQ96SI9 672 aaKnown RBP12.83□□□□□ -0.36
UBR4-205ENST00000417040 STX18Q9P2W9 335 aaKnown RBP12.83□□□□□ -0.36
UBR4-205ENST00000417040 PCDHA6Q9UN73 950 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 PCDHA8Q9Y5H6 950 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 ATP10DQ9P241 1426 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 NEMP1O14524 444 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 KCNA3P22001 575 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 KLHL38Q2WGJ6 581 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 SYNE4Q8N205 404 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 CYFIP2Q96F07 1278 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 SLC40A1Q9NP59 571 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 KLHL8Q9P2G9 620 aaPredicted RBP12.82□□□□□ -0.36
UBR4-205ENST00000417040 ZNF229Q9UJW7 825 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 TARSL2A2RTX5 802 aaKnown RBP12.82□□□□□ -0.36
UBR4-205ENST00000417040 CYP2E1P05181 493 aaPredicted RBP12.82□□□□□ -0.36
UBR4-205ENST00000417040 TAC1P20366 129 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 KPNA2P52292 529 aaKnown RBP12.82□□□□□ -0.36
UBR4-205ENST00000417040 AP1B1Q10567 949 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 ANO5Q75V66 913 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 THNSL1Q8IYQ7 743 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 STAG2Q8N3U4 1231 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 RBM12Q9NTZ6 932 aaKnown RBP12.82□□□□□ -0.36
UBR4-205ENST00000417040 KIF17Q9P2E2 1029 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 SNX5Q9Y5X3 404 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 TRIM49P0CI25 452 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 TRIM49CP0CI26 452 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 MTM1Q13496 603 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 PDXDC1Q6P996 788 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 KIAA2013Q8IYS2 634 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 OR6B3Q8NGW1 331 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 MDM1Q8TC05 714 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 CSADQ9Y600 493 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 ABCB11O95342 1321 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 PFKFB3Q16875 520 aaPredicted RBP12.82□□□□□ -0.36
UBR4-205ENST00000417040 PPP4R3CPQ6ZMV5 832 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 ZNF579Q8NAF0 562 aaKnown RBP12.82□□□□□ -0.36
UBR4-205ENST00000417040 RNPC3Q96LT9 517 aaKnown RBP12.82□□□□□ -0.36
UBR4-205ENST00000417040 TBX22Q9Y458 520 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 SCP2P22307 547 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 CACNB3P54284 484 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 PPP4R4Q6NUP7 873 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 C4orf33Q8N1A6 199 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 GALNT4Q8N4A0 578 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 SLC17A8Q8NDX2 589 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 ZIM3Q96PE6 472 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 RPF1Q9H9Y2 349 aaKnown RBP12.82□□□□□ -0.36
UBR4-205ENST00000417040 SARS2Q9NP81 518 aaKnown RBP12.82□□□□□ -0.36
UBR4-205ENST00000417040 EHD2Q9NZN4 543 aa12.82□□□□□ -0.36
UBR4-205ENST00000417040 ANP32DO95626 131 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 ARSEP51690 589 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 UBE3AQ05086 875 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 KDELC2Q7Z4H8 507 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 DDX42Q86XP3 938 aaKnown RBP eCLIP12.81□□□□□ -0.36
UBR4-205ENST00000417040 RFWD2Q8NHY2 731 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 SNRNP27Q8WVK2 155 aaKnown RBP12.81□□□□□ -0.36
UBR4-205ENST00000417040 BRIP1Q9BX63 1249 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 DDX28Q9NUL7 540 aaKnown RBP12.81□□□□□ -0.36
UBR4-205ENST00000417040 CHEK2O96017 543 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 SPDYE1Q8NFV5 336 aaPredicted RBP12.81□□□□□ -0.36
UBR4-205ENST00000417040 DACH2Q96NX9 599 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 SNX12Q9UMY4 172 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 UGGT1Q9NYU2 1555 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 FAM205CA6NFA0 338 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 ZNF233A6NK53 670 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 COPB2P35606 906 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 RBBP7Q16576 425 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 FRA10AC1Q70Z53 315 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 RHPN2Q8IUC4 686 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 SLC44A5Q8NCS7 719 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 OLFM3Q96PB7 478 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 ADNPQ9H2P0 1102 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 ASCC2Q9H1I8 757 aaPredicted RBP12.81□□□□□ -0.36
UBR4-205ENST00000417040 RHBDL2Q9NX52 303 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 HLA-DPA1P20036 260 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 TCN1P20061 433 aaPredicted RBP12.81□□□□□ -0.36
UBR4-205ENST00000417040 CHRNA3P32297 505 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 DRP2Q13474 957 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 NLRP10Q86W26 655 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 MB21D2Q8IYB1 491 aaPredicted RBP12.81□□□□□ -0.36
UBR4-205ENST00000417040 ENAHQ8N8S7 591 aaPredicted RBP12.81□□□□□ -0.36
UBR4-205ENST00000417040 SLC30A5Q8TAD4 765 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 CPSF3Q9UKF6 684 aaKnown RBP12.81□□□□□ -0.36
UBR4-205ENST00000417040 XDHP47989 1333 aa12.81□□□□□ -0.36
UBR4-205ENST00000417040 PLEKHG3A1L390 1219 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 PYGBP11216 843 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 PRAMEP78395 509 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 TBC1D9BQ66K14 1250 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 RAD9BQ6WBX8 426 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 TTC30BQ8N4P2 665 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 CELF4Q9BZC1 486 aaKnown RBP12.8□□□□□ -0.36
UBR4-205ENST00000417040 FAM196BA6NMK8 535 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 KRT38O76015 456 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 FXR1P51114 621 aaKnown RBP eCLIP12.8□□□□□ -0.366e-7■■■■□ 20.9
UBR4-205ENST00000417040 HIC1Q14526 733 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 MORF4L2Q15014 288 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 CCNI2Q6ZMN8 369 aaPredicted RBP12.8□□□□□ -0.36
UBR4-205ENST00000417040 RBM41Q96IZ5 413 aaKnown RBP12.8□□□□□ -0.36
UBR4-205ENST00000417040 TRABDQ9H4I3 376 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 STK32BQ9NY57 414 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms