RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 APEX2Q9UBZ4 518 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 GCOM1H8Y6P7 765 aaPredicted RBP10.69□□□□□ -0.7
SS18-203ENST00000415083 MYZAPP0CAP1 466 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 BMP3P12645 472 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 PPP2R2AP63151 447 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 IFI35P80217 286 aaPredicted RBP10.69□□□□□ -0.7
SS18-203ENST00000415083 ARHGAP44Q17R89 818 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 ABCB5Q2M3G0 1257 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 AGBL2Q5U5Z8 902 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 CCDC13Q8IYE1 715 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 SEPT12Q8IYM1 358 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 FBXO25Q8TCJ0 367 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 HOOK2Q96ED9 719 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 PRMT6Q96LA8 375 aaPredicted RBP10.69□□□□□ -0.7
SS18-203ENST00000415083 POP1Q99575 1024 aaKnown RBP10.69□□□□□ -0.7
SS18-203ENST00000415083 GLT8D2Q9H1C3 349 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 PNMA2Q9UL42 364 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 ATP8A1Q9Y2Q0 1164 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 GMNCA6NCL1 334 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 SPDYE3A6NKU9 549 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 SRRM3A6NNA2 597 aaPredicted RBP10.69□□□□□ -0.7
SS18-203ENST00000415083 FOXO6A8MYZ6 492 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 RPL21P46778 160 aaKnown RBP10.69□□□□□ -0.7
SS18-203ENST00000415083 TNFAIP8L3Q5GJ75 292 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 IL31RAQ8NI17 732 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 TATDN2Q93075 761 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 FAM84AQ96KN4 292 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 GLIS2Q9BZE0 524 aaPredicted RBP10.69□□□□□ -0.7
SS18-203ENST00000415083 VCPKMTQ9H867 229 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 TUFT1Q9NNX1 390 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.69□□□□□ -0.72e-7■■■■■ 220.9
SS18-203ENST00000415083 ALG6Q9Y672 507 aa10.69□□□□□ -0.7
SS18-203ENST00000415083 ITGB5P18084 799 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 IBSPP21815 317 aaPredicted RBP10.68□□□□□ -0.7
SS18-203ENST00000415083 EPC2Q52LR7 807 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 COL23A1Q86Y22 540 aaPredicted RBP10.68□□□□□ -0.7
SS18-203ENST00000415083 ERMNQ8TAM6 284 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 KREMEN1Q96MU8 473 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 CBWD1Q9BRT8 395 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 ERP44Q9BS26 406 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 PCIF1Q9H4Z3 704 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 PARVGQ9HBI0 331 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 NOCTQ9UK39 431 aaKnown RBP10.68□□□□□ -0.7
SS18-203ENST00000415083 AMFRQ9UKV5 643 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 YDJCA8MPS7 323 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 DHX15O43143 795 aaKnown RBP10.68□□□□□ -0.7
SS18-203ENST00000415083 SGPL1O95470 568 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 CTNNA2P26232 953 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 BFSP1Q12934 665 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 LRCH2Q5VUJ6 765 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 JAMLQ86YT9 394 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 SEMA4DQ92854 862 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 SEC16BQ96JE7 1060 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 AAASQ9NRG9 546 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 BCCIPQ9P287 314 aaKnown RBP eCLIP10.68□□□□□ -0.7
SS18-203ENST00000415083 SNX24Q9Y343 169 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 DOCK5Q9H7D0 1870 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 HIP1RO75146 1068 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 TBCAO75347 108 aaKnown RBP10.68□□□□□ -0.7
SS18-203ENST00000415083 PYGMP11217 842 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 B4GALNT4Q76KP1 1039 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 NOP9Q86U38 636 aaKnown RBP10.68□□□□□ -0.7
SS18-203ENST00000415083 AGPAT1Q99943 283 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 MKNK1Q9BUB5 465 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 MRIQ9BWK5 157 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 SEMA4AQ9H3S1 761 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 CD248Q9HCU0 757 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 GGA2Q9UJY4 613 aa10.68□□□□□ -0.7
SS18-203ENST00000415083 LOC102724159A0A0B4J2E5 919 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 CFBP00751 764 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 FOSP01100 380 aaPredicted RBP10.67□□□□□ -0.7
SS18-203ENST00000415083 VIL1P09327 827 aaKnown RBP10.67□□□□□ -0.7
SS18-203ENST00000415083 GAP43P17677 238 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 RPL13P26373 211 aaKnown RBP10.67□□□□□ -0.7
SS18-203ENST00000415083 HADHBP55084 474 aaKnown RBP10.67□□□□□ -0.7
SS18-203ENST00000415083 PWP2Q15269 919 aaKnown RBP10.67□□□□□ -0.7
SS18-203ENST00000415083 ERMARDQ5T6L9 678 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 CARD9Q9H257 536 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 FBXO28Q9NVF7 368 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 ECE2O60344 883 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 GRIN3BO60391 1043 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 FAM13AO94988 1023 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 ADRB2P07550 413 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 PRELPP51888 382 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 MCCD1P59942 119 aaPredicted RBP10.67□□□□□ -0.7
SS18-203ENST00000415083 DR1Q01658 176 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 BIRC3Q13489 604 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 TCEAL1Q15170 157 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 TBC1D10BQ4KMP7 808 aaPredicted RBP10.67□□□□□ -0.7
SS18-203ENST00000415083 SWT1Q5T5J6 900 aaKnown RBP10.67□□□□□ -0.7
SS18-203ENST00000415083 CCDC174Q6PII3 467 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 MAEAQ7L5Y9 396 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 SLC9A9Q8IVB4 645 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 CCT6BQ92526 530 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 EMSYQ7Z589 1322 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 CNTNAP1P78357 1384 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 NUDT17P0C025 328 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 NPR1P16066 1061 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 CREB1P16220 341 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 LMNB1P20700 586 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms