RNA–Protein interactions for RNA: ENST00000413409.6

PTPRC-206, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best) BASIC

Gene PTPRC, Length 1,338 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-206ENST00000413409 TNNT1P13805 278 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 FECHP22830 423 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 RPA1P27694 616 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 HSD17B4P51659 736 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 PMS1P54277 932 aaKnown RBP18.87■□□□□ 0.61
PTPRC-206ENST00000413409 SETQ01105 290 aaPredicted RBP18.87■□□□□ 0.61
PTPRC-206ENST00000413409 CENPPQ6IPU0 288 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 CNKSR3Q6P9H4 555 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 EP400NLQ6ZTU2 488 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 PPFIBP1Q86W92 1011 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 RNF135Q8IUD6 432 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 CNGA4Q8IV77 575 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 DHX38Q92620 1227 aaKnown RBP18.87■□□□□ 0.61
PTPRC-206ENST00000413409 EDAQ92838 391 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 DNAJC19Q96DA6 116 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 NAA15Q9BXJ9 866 aaKnown RBP18.87■□□□□ 0.61
PTPRC-206ENST00000413409 TAB2Q9NYJ8 693 aa18.87■□□□□ 0.61
PTPRC-206ENST00000413409 A0A1W2PQC6 194 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 RBM47A0AV96 593 aaKnown RBP18.86■□□□□ 0.61
PTPRC-206ENST00000413409 USP27XA6NNY8 438 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 MFAP3LO75121 409 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 CFBP00751 764 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 PLA2G4BP0C869 781 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 ALAS1P13196 640 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 GTF2F1P35269 517 aaKnown RBP eCLIP18.86■□□□□ 0.61
PTPRC-206ENST00000413409 ZNF76P36508 570 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 LRRC63Q05C16 580 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 PTPN11Q06124 597 aaPredicted RBP18.86■□□□□ 0.61
PTPRC-206ENST00000413409 PTGISQ16647 500 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 CSGALNACT2Q8N6G5 542 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 BANK1Q8NDB2 785 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 OR6J1Q8NGC5 347 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 AFAP1L1Q8TED9 768 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 PPP1R13BQ96KQ4 1090 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 BAG1Q99933 345 aaPredicted RBP18.86■□□□□ 0.61
PTPRC-206ENST00000413409 POLR3CQ9BUI4 534 aaPredicted RBP18.86■□□□□ 0.61
PTPRC-206ENST00000413409 FAM50BQ9Y247 325 aa18.86■□□□□ 0.61
PTPRC-206ENST00000413409 RIF1Q5UIP0 2472 aaKnown RBP18.85■□□□□ 0.61
PTPRC-206ENST00000413409 UQCRHLA0A096LP55 91 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 ABHD14A-ACY1A0A1B0GW23 586 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 FRMD3A2A2Y4 597 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 MED24O75448 989 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 FGFR1OPO95684 399 aaKnown RBP18.85■□□□□ 0.61
PTPRC-206ENST00000413409 UQCRHP07919 91 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 SELPP16109 830 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 MUTP22033 750 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 COASYQ13057 564 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 PTPN14Q15678 1187 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 TKFCQ3LXA3 575 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 NCAPH2Q6IBW4 605 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 CCDC65Q8IXS2 484 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 COPS5Q92905 334 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 SLC5A5Q92911 643 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 GJA10Q969M2 543 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 SRRTQ9BXP5 876 aaKnown RBP18.85■□□□□ 0.61
PTPRC-206ENST00000413409 MAP3K20Q9NYL2 800 aaKnown RBP18.85■□□□□ 0.61
PTPRC-206ENST00000413409 CCPG1Q9ULG6 757 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 KIAA1024Q9UPX6 916 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 NOD1Q9Y239 953 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 PAXBP1Q9Y5B6 917 aa18.85■□□□□ 0.61
PTPRC-206ENST00000413409 FRMPD4Q14CM0 1322 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 GOLGA6L9A6NEM1 432 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 A6NJR5 290 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 ZSCAN12O43309 604 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 SMAD2Q15796 467 aaKnown RBP18.84■□□□□ 0.61
PTPRC-206ENST00000413409 EPC2Q52LR7 807 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 TIGD5Q53EQ6 642 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 CEP135Q66GS9 1140 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 GDF6Q6KF10 455 aaPredicted RBP18.84■□□□□ 0.61
PTPRC-206ENST00000413409 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.84■□□□□ 0.61
PTPRC-206ENST00000413409 LRRC8DQ7L1W4 858 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 DYMQ7RTS9 669 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 GPBP1Q86WP2 473 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 MCF2L2Q86YR7 1114 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 CAGE1Q8TC20 777 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 PBXIP1Q96AQ6 731 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 CLDND1Q9NY35 253 aa18.84■□□□□ 0.61
PTPRC-206ENST00000413409 TMEM221A6NGB7 291 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 M0R296 226 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 IDEP14735 1019 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 CYP11B2P19099 503 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 SLC12A3P55017 1021 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 DLX2Q07687 328 aaPredicted RBP18.83■□□□□ 0.61
PTPRC-206ENST00000413409 PPP2R5CQ13362 524 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 CLUL1Q15846 466 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 PTPN21Q16825 1174 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 PTPROQ16827 1216 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 FAM26FQ5R3K3 315 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 ANKRD40Q6AI12 368 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 TRIM67Q6ZTA4 783 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 NIPA1Q7RTP0 329 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 SP7Q8TDD2 431 aaPredicted RBP18.83■□□□□ 0.61
PTPRC-206ENST00000413409 CNOT6LQ96LI5 555 aaKnown RBP18.83■□□□□ 0.61
PTPRC-206ENST00000413409 VPS16Q9H269 839 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 TUFT1Q9NNX1 390 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 SLC39A2Q9NP94 309 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 INSL6Q9Y581 213 aa18.83■□□□□ 0.61
PTPRC-206ENST00000413409 LOXHD1Q8IVV2 1947 aa18.83■□□□□ 0.6
PTPRC-206ENST00000413409 E9PMD0 336 aa18.82■□□□□ 0.6
PTPRC-206ENST00000413409 DYNC1I1O14576 645 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms