RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 SSBP05455 408 aaKnown RBP eCLIP13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 DCNP07585 359 aaKnown RBP13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 CDC27P30260 824 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 ZNF76P36508 570 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 AP3B2Q13367 1082 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 LETM2Q2VYF4 491 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 APOA5Q6Q788 366 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 TMTC2Q8N394 836 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 SLC44A3Q8N4M1 653 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 KCNG4Q8TDN1 519 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 RUFY2Q8WXA3 655 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 ACSF2Q96CM8 615 aaPredicted RBP13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 CNTNAP3BQ96NU0 1288 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 SH2D3AQ9BRG2 576 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 MRPL9Q9BYD2 267 aaKnown RBP13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 CNTNAP3Q9BZ76 1288 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 TBC1D17Q9HA65 648 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 CA14Q9ULX7 337 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 INPP5FQ9Y2H2 1132 aa13.46□□□□□ -0.25
SPTLC1P3-201ENST00000403408 FRYQ5TBA9 3013 aa13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 OATP04181 439 aa13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 PSAPP07602 524 aa13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 SP9P0CG40 484 aa13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 PRKCEQ02156 737 aa13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 NOMO2Q5JPE7 1267 aa13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 AGMOQ6ZNB7 445 aa13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 SUMF1Q8NBK3 374 aa13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 ZNF707Q96C28 371 aaPredicted RBP13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 MAP7D2Q96T17 732 aa13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 TRAIPQ9BWF2 469 aa13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 GBP3Q9H0R5 595 aa13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 WNT16Q9UBV4 365 aa13.45□□□□□ -0.26
SPTLC1P3-201ENST00000403408 F5P12259 2224 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 A0A087WZ62 844 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 F8W810 466 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 RFPL2O75678 378 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 EFEMP2O95967 443 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 KLRC2P26717 231 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 NECTIN1Q15223 517 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 SPECC1Q5M775 1068 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 CREB3L3Q68CJ9 461 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 C15orf39Q6ZRI6 1047 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 KSR1Q8IVT5 923 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 SMAP1Q8IYB5 467 aaPredicted RBP13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 GPR152Q8TDT2 470 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 NLRP7Q8WX94 980 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 FDXACB1Q9BRP7 624 aaPredicted RBP13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 RPP25Q9BUL9 199 aaKnown RBP13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 FOXQ1Q9C009 403 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 WDR6Q9NNW5 1121 aaKnown RBP13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 TBC1D22BQ9NU19 505 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 MARCH5Q9NX47 278 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 IGSF9Q9P2J2 1179 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 EPS15L1Q9UBC2 864 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 CEP131Q9UPN4 1083 aa13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 MTCL1Q9Y4B5 1905 aaKnown RBP13.44□□□□□ -0.26
SPTLC1P3-201ENST00000403408 IGKV6-21A0A0C4DH24 114 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 MSH4O15457 936 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 ZNF623O75123 536 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 CIITAP33076 1130 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 EXOSC10Q01780 885 aaKnown RBP13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 AAMPQ13685 434 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 GIT2Q14161 759 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 PUM1Q14671 1186 aaKnown RBP eCLIP13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 PRR16Q569H4 304 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 CMASQ8NFW8 434 aaPredicted RBP13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 SEMA4AQ9H3S1 761 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 MAN1C1Q9NR34 630 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 CHST12Q9NRB3 414 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 DISC1Q9NRI5 854 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 FAM105AQ9NUU6 356 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 DACT1Q9NYF0 836 aa13.43□□□□□ -0.26
SPTLC1P3-201ENST00000403408 ZZEF1O43149 2961 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 CCDC195A0A1B0GUA6 201 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 STK25O00506 426 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 C2CD2LO14523 706 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 TEX28O15482 410 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 PAPLNO95428 1278 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 SPATA31D3P0C874 917 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 TMOD1P28289 359 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 RTN1Q16799 776 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 RSPO4Q2I0M5 234 aaPredicted RBP13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 UBXN11Q5T124 520 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 TWF2Q6IBS0 349 aaKnown RBP13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 SPATA31D4Q6ZUB0 917 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 PPFIBP1Q86W92 1011 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 TEX2Q8IWB9 1127 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 RNF168Q8IYW5 571 aaPredicted RBP13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 FAM167AQ96KS9 214 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 UNC45AQ9H3U1 944 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 FOXD4L1Q9NU39 408 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 PIN4Q9Y237 131 aaKnown RBP13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 ZFYVE26Q68DK2 2539 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 BAHCC1Q9P281 2608 aa13.42□□□□□ -0.26
SPTLC1P3-201ENST00000403408 CLUHO75153 1309 aa13.41□□□□□ -0.26
SPTLC1P3-201ENST00000403408 MYH15Q9Y2K3 1946 aa13.41□□□□□ -0.26
SPTLC1P3-201ENST00000403408 WDR64B1ANS9 1081 aa13.41□□□□□ -0.26
SPTLC1P3-201ENST00000403408 NRP1O14786 923 aa13.41□□□□□ -0.26
SPTLC1P3-201ENST00000403408 INPPL1O15357 1258 aa13.41□□□□□ -0.26
SPTLC1P3-201ENST00000403408 SRFP11831 508 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms