RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 GJA10Q969M2 543 aa18.14■□□□□ 0.49
CUX2-202ENST00000397643 GCOM2Q9BZD3 368 aaPredicted RBP18.14■□□□□ 0.49
CUX2-202ENST00000397643 UNC45AQ9H3U1 944 aa18.14■□□□□ 0.49
CUX2-202ENST00000397643 C6orf50Q9HD87 102 aa18.14■□□□□ 0.49
CUX2-202ENST00000397643 DUSP12Q9UNI6 340 aa18.14■□□□□ 0.49
CUX2-202ENST00000397643 NID2Q14112 1375 aa18.14■□□□□ 0.49
CUX2-202ENST00000397643 DMXL1Q9Y485 3027 aa18.14■□□□□ 0.49
CUX2-202ENST00000397643 A0A087WZ62 844 aa18.13■□□□□ 0.49
CUX2-202ENST00000397643 CHMP2AO43633 222 aa18.13■□□□□ 0.49
CUX2-202ENST00000397643 LILRB3O75022 631 aa18.13■□□□□ 0.49
CUX2-202ENST00000397643 CLCN4P51793 760 aa18.13■□□□□ 0.49
CUX2-202ENST00000397643 TWF2Q6IBS0 349 aaKnown RBP18.13■□□□□ 0.49
CUX2-202ENST00000397643 GLB1LQ6UWU2 654 aa18.13■□□□□ 0.49
CUX2-202ENST00000397643 OTOP3Q7RTS5 596 aa18.13■□□□□ 0.49
CUX2-202ENST00000397643 KLHL5Q96PQ7 755 aa18.13■□□□□ 0.49
CUX2-202ENST00000397643 RIT2Q99578 217 aa18.13■□□□□ 0.49
CUX2-202ENST00000397643 FDXACB1Q9BRP7 624 aaPredicted RBP18.13■□□□□ 0.49
CUX2-202ENST00000397643 NIFKQ9BYG3 293 aaKnown RBP18.13■□□□□ 0.49
CUX2-202ENST00000397643 KCNK12Q9HB15 430 aa18.13■□□□□ 0.49
CUX2-202ENST00000397643 FAM105AQ9NUU6 356 aa18.13■□□□□ 0.49
CUX2-202ENST00000397643 PIN4Q9Y237 131 aaKnown RBP18.13■□□□□ 0.49
CUX2-202ENST00000397643 INPP5FQ9Y2H2 1132 aa18.13■□□□□ 0.49
CUX2-202ENST00000397643 CARNS1A5YM72 827 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 GAS7O60861 476 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 N4BP1O75113 896 aaKnown RBP18.12■□□□□ 0.49
CUX2-202ENST00000397643 ZNF623O75123 536 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 SFPQP23246 707 aaKnown RBP eCLIP18.12■□□□□ 0.49
CUX2-202ENST00000397643 SFNP31947 248 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 ID4P47928 161 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 JAK3P52333 1124 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 ANGPT1Q15389 498 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 B3GNT9Q6UX72 402 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 PPFIBP1Q86W92 1011 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 ZNF280BQ86YH2 543 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 DTWD2Q8NBA8 298 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 TMEM87AQ8NBN3 555 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 CCDC12Q8WUD4 166 aaPredicted RBP18.12■□□□□ 0.49
CUX2-202ENST00000397643 ACSF2Q96CM8 615 aaPredicted RBP18.12■□□□□ 0.49
CUX2-202ENST00000397643 SH2D3AQ9BRG2 576 aa18.12■□□□□ 0.49
CUX2-202ENST00000397643 PRPF3O43395 683 aaKnown RBP18.11■□□□□ 0.49
CUX2-202ENST00000397643 NARSO43776 548 aaKnown RBP18.11■□□□□ 0.49
CUX2-202ENST00000397643 EIF5BO60841 1220 aaKnown RBP18.11■□□□□ 0.49
CUX2-202ENST00000397643 PSMD10O75832 226 aa18.11■□□□□ 0.49
CUX2-202ENST00000397643 CNPP09543 421 aaKnown RBP18.11■□□□□ 0.49
CUX2-202ENST00000397643 GNA11P29992 359 aa18.11■□□□□ 0.49
CUX2-202ENST00000397643 AFF1P51825 1210 aaKnown RBP18.11■□□□□ 0.49
CUX2-202ENST00000397643 CDC42EP1Q00587 391 aa18.11■□□□□ 0.49
CUX2-202ENST00000397643 MTERF2Q49AM1 385 aa18.11■□□□□ 0.49
CUX2-202ENST00000397643 LRCH2Q5VUJ6 765 aa18.11■□□□□ 0.49
CUX2-202ENST00000397643 C15orf39Q6ZRI6 1047 aa18.11■□□□□ 0.49
CUX2-202ENST00000397643 ZNF410Q86VK4 478 aa18.11■□□□□ 0.49
CUX2-202ENST00000397643 SIX5Q8N196 739 aa18.11■□□□□ 0.49
CUX2-202ENST00000397643 GBP3Q9H0R5 595 aa18.11■□□□□ 0.49
CUX2-202ENST00000397643 SEPT9Q9UHD8 586 aaPredicted RBP18.11■□□□□ 0.49
CUX2-202ENST00000397643 OTOGLQ3ZCN5 2332 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 CCDC196A0A1B0GTZ2 297 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 DDHD2O94830 711 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 SKIP12755 728 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 CPA1P15085 419 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 RAB27AP51159 221 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 RNASELQ05823 741 aaKnown RBP18.1■□□□□ 0.49
CUX2-202ENST00000397643 LETM2Q2VYF4 491 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 XKR3Q5GH77 459 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 AGMOQ6ZNB7 445 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 KSR1Q8IVT5 923 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 RDM1Q8NG50 284 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 PHKBQ93100 1093 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 RTP3Q9BQQ7 232 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 TEKT3Q9BXF9 490 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 DOCK8Q8NF50 2099 aa18.1■□□□□ 0.49
CUX2-202ENST00000397643 SSBP05455 408 aaKnown RBP eCLIP18.09■□□□□ 0.49
CUX2-202ENST00000397643 USP11P51784 963 aa18.09■□□□□ 0.49
CUX2-202ENST00000397643 NTRK3Q16288 839 aa18.09■□□□□ 0.49
CUX2-202ENST00000397643 RHPN2Q8IUC4 686 aa18.09■□□□□ 0.49
CUX2-202ENST00000397643 CMASQ8NFW8 434 aaPredicted RBP18.09■□□□□ 0.49
CUX2-202ENST00000397643 EMILIN2Q9BXX0 1053 aa18.09■□□□□ 0.49
CUX2-202ENST00000397643 IFT122Q9HBG6 1241 aa18.09■□□□□ 0.49
CUX2-202ENST00000397643 AGPAT5Q9NUQ2 364 aa18.09■□□□□ 0.49
CUX2-202ENST00000397643 IGSF9Q9P2J2 1179 aa18.09■□□□□ 0.49
CUX2-202ENST00000397643 SUCLA2Q9P2R7 463 aaPredicted RBP18.09■□□□□ 0.49
CUX2-202ENST00000397643 FBXL21Q9UKT6 434 aa18.09■□□□□ 0.49
CUX2-202ENST00000397643 NAP1L2Q9ULW6 460 aaPredicted RBP18.09■□□□□ 0.49
CUX2-202ENST00000397643 PCDHB2Q9Y5E7 798 aa18.09■□□□□ 0.49
CUX2-202ENST00000397643 CEP250Q9BV73 2442 aa18.09■□□□□ 0.49
CUX2-202ENST00000397643 KRBA1A5PL33 1030 aa18.08■□□□□ 0.48
CUX2-202ENST00000397643 MAFO75444 373 aaPredicted RBP18.08■□□□□ 0.48
CUX2-202ENST00000397643 KLRC2P26717 231 aa18.08■□□□□ 0.48
CUX2-202ENST00000397643 CATSPER4Q7RTX7 472 aa18.08■□□□□ 0.48
CUX2-202ENST00000397643 MIER3Q7Z3K6 550 aa18.08■□□□□ 0.48
CUX2-202ENST00000397643 MRPL10Q7Z7H8 261 aaKnown RBP18.08■□□□□ 0.48
CUX2-202ENST00000397643 BICD2Q8TD16 824 aa18.08■□□□□ 0.48
CUX2-202ENST00000397643 NLRP4Q96MN2 994 aa18.08■□□□□ 0.48
CUX2-202ENST00000397643 INO80BQ9C086 356 aaPredicted RBP18.08■□□□□ 0.48
CUX2-202ENST00000397643 MARCH5Q9NX47 278 aa18.08■□□□□ 0.48
CUX2-202ENST00000397643 VPS54Q9P1Q0 977 aa18.08■□□□□ 0.48
CUX2-202ENST00000397643 NCOR2Q9Y618 2525 aa18.07■□□□□ 0.48
CUX2-202ENST00000397643 EFEMP2O95967 443 aa18.07■□□□□ 0.48
CUX2-202ENST00000397643 DNM2P50570 870 aa18.07■□□□□ 0.48
CUX2-202ENST00000397643 KRT32Q14532 448 aa18.07■□□□□ 0.48
CUX2-202ENST00000397643 Q4G0T1 1027 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms