RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 SYCP3Q8IZU3 236 aa22.32■■□□□ 1.16
CLK3-202ENST00000395066 CCDC26Q8TAB7 109 aa22.32■■□□□ 1.16
CLK3-202ENST00000395066 MAGOHBQ96A72 148 aaKnown RBP22.32■■□□□ 1.16
CLK3-202ENST00000395066 TMX4Q9H1E5 349 aaPredicted RBP22.32■■□□□ 1.16
CLK3-202ENST00000395066 SLITRK6Q9H5Y7 841 aa22.32■■□□□ 1.16
CLK3-202ENST00000395066 KLC4Q9NSK0 619 aa22.32■■□□□ 1.16
CLK3-202ENST00000395066 TMEM253P0C7T8 217 aa22.32■■□□□ 1.16
CLK3-202ENST00000395066 PRELPP51888 382 aa22.32■■□□□ 1.16
CLK3-202ENST00000395066 SF3A3Q12874 501 aaKnown RBP eCLIP22.32■■□□□ 1.162e-6■■■■■ 37.8
CLK3-202ENST00000395066 KRT71Q3SY84 523 aa22.32■■□□□ 1.16
CLK3-202ENST00000395066 C3orf20Q8ND61 904 aa22.32■■□□□ 1.16
CLK3-202ENST00000395066 GOPCQ9HD26 462 aa22.32■■□□□ 1.16
CLK3-202ENST00000395066 TUFT1Q9NNX1 390 aa22.32■■□□□ 1.16
CLK3-202ENST00000395066 INTUQ9ULD6 942 aa22.32■■□□□ 1.16
CLK3-202ENST00000395066 TRAPPC3O43617 180 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 ALDH1B1P30837 517 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 COL23A1Q86Y22 540 aaPredicted RBP22.31■■□□□ 1.16
CLK3-202ENST00000395066 CPNE8Q86YQ8 564 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 ARHGEF19Q8IW93 802 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 KAT5Q92993 513 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 ELMO3Q96BJ8 720 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 LXNQ9BS40 222 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 DDX20Q9UHI6 824 aaKnown RBP22.31■■□□□ 1.16
CLK3-202ENST00000395066 NCANO14594 1321 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 AFF2P51816 1311 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 TCP10L2B9ZVM9 353 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 ATMINO43313 823 aaPredicted RBP22.31■■□□□ 1.16
CLK3-202ENST00000395066 HIP1RO75146 1068 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 RASSF9O75901 435 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 SHBGP04278 402 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 MMP10P09238 476 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 MKRN4PQ13434 485 aaPredicted RBP22.31■■□□□ 1.16
CLK3-202ENST00000395066 LLGL1Q15334 1064 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 DAW1Q8N136 415 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 MDM1Q8TC05 714 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 KRT35Q92764 455 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 ZNF577Q9BSK1 485 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 CD248Q9HCU0 757 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 FRMPD4Q14CM0 1322 aa22.31■■□□□ 1.16
CLK3-202ENST00000395066 COL11A2P13942 1736 aaPredicted RBP22.31■■□□□ 1.16
CLK3-202ENST00000395066 PIK3CDO00329 1044 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 CHUKO15111 745 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 NPEPPSP55786 919 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 BFSP1Q12934 665 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 AOC3Q16853 763 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 STRIP1Q5VSL9 837 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 BTNL9Q6UXG8 535 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 SLC5A5Q92911 643 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 UBE2TQ9NPD8 197 aaPredicted RBP22.3■■□□□ 1.16
CLK3-202ENST00000395066 SNX24Q9Y343 169 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 CLRN2A0PK11 232 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 ANXA13P27216 316 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 PPP2R5CQ13362 524 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 C18orf8Q96DM3 657 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 CXorf56Q9H5V9 222 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 ACTR5Q9H9F9 607 aaPredicted RBP22.3■■□□□ 1.16
CLK3-202ENST00000395066 FBXO28Q9NVF7 368 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 DMAC2Q9NW81 257 aa22.3■■□□□ 1.16
CLK3-202ENST00000395066 SMIM23A6NLE4 172 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 POLR2MP0CAP2 368 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 KRT13P13646 458 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 PPP2R2AP63151 447 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 DR1Q01658 176 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 MTMR3Q13615 1198 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 SLC15A2Q16348 729 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 SLC27A3Q5K4L6 730 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 EMSYQ7Z589 1322 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 UHMK1Q8TAS1 419 aaKnown RBP22.29■■□□□ 1.16
CLK3-202ENST00000395066 FMO2Q99518 471 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 SLC40A1Q9NP59 571 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 MYH11P35749 1972 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 TMEM150BA6NC51 233 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 K7ENM7 598 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 GCLMP48507 274 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 AGBL2Q5U5Z8 902 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 CDAN1Q8IWY9 1227 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 LMO3Q8TAP4 145 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 CCDC114Q96M63 670 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 ZBTB21Q9ULJ3 1066 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 STK24Q9Y6E0 443 aa22.29■■□□□ 1.16
CLK3-202ENST00000395066 PLTPP55058 493 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 PTENP60484 403 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 PPP3CAQ08209 521 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 IFFO1Q0D2I5 559 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 SPRED3Q2MJR0 410 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 CEP55Q53EZ4 464 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 ZKSCAN4Q969J2 545 aaPredicted RBP22.28■■□□□ 1.16
CLK3-202ENST00000395066 MASTLQ96GX5 879 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.28■■□□□ 1.16
CLK3-202ENST00000395066 ZNF131P52739 623 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 MAPK7Q13164 816 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 SEC14L1Q92503 715 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 CBWD1Q9BRT8 395 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 CTTNBP2NLQ9P2B4 639 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 ALG6Q9Y672 507 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 SLX4Q8IY92 1834 aa22.28■■□□□ 1.16
CLK3-202ENST00000395066 GOLGA6L7A0A1B0GV03 622 aa22.27■■□□□ 1.16
CLK3-202ENST00000395066 CAND2O75155 1236 aa22.27■■□□□ 1.16
CLK3-202ENST00000395066 RDXP35241 583 aaKnown RBP22.27■■□□□ 1.16
CLK3-202ENST00000395066 ZDHHC14Q8IZN3 488 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms