RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 DKC1O60832 514 aaKnown RBP eCLIP10.03□□□□□ -0.8
PTPRA-204ENST00000380393 DDX5P17844 614 aaKnown RBP10.03□□□□□ -0.8
PTPRA-204ENST00000380393 VPS41P49754 854 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 ZNF132P52740 706 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 SMIM5Q71RC9 77 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 ZBED8Q8IZ13 594 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 SPERTQ8NA61 448 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 NRG4Q8WWG1 115 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 HGH1Q9BTY7 390 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 FGFR1OP2Q9NVK5 253 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 FBXL5Q9UKA1 691 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 ARL2BPQ9Y2Y0 163 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 KLF18A0A0U1RQI7 1052 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 PRKACBP22694 351 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 IARSP41252 1262 aaKnown RBP10.03□□□□□ -0.8
PTPRA-204ENST00000380393 MXI1P50539 228 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 NEK3P51956 506 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 VSIG1Q86XK7 387 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 GRAMD1CQ8IYS0 662 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 TTC5Q8N0Z6 440 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 NUP93Q8N1F7 819 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 GIPC3Q8TF64 312 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 ANKRD36BP1Q96IX9 119 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 CARMIL3Q8ND23 1372 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 LINC00854A0A1B0GVQ3 168 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 FAM47E-STBD1D6RA91 191 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 CAPN9O14815 690 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 CSPG5O95196 566 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 PLCD1P51178 756 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 WDR72Q3MJ13 1102 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 RIC3Q7Z5B4 369 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 GIMAP1Q8WWP7 306 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 MS4A14Q96JA4 679 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 GLT8D2Q9H1C3 349 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 KIAA1257Q9ULG3 409 aa10.03□□□□□ -0.8
PTPRA-204ENST00000380393 KIF28PB7ZC32 967 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 E9PBE3 544 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 S100BP04271 92 aaPredicted RBP10.02□□□□□ -0.8
PTPRA-204ENST00000380393 CYLC1P35663 651 aaPredicted RBP10.02□□□□□ -0.8
PTPRA-204ENST00000380393 MTMR3Q13615 1198 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 PDE1CQ14123 709 aaPredicted RBP10.02□□□□□ -0.8
PTPRA-204ENST00000380393 TRIM14Q14142 442 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 CFAP221Q4G0U5 840 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 BBS5Q8N3I7 341 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 DGCR14Q96DF8 476 aaKnown RBP10.02□□□□□ -0.8
PTPRA-204ENST00000380393 DBNDD2Q9BQY9 259 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 VPS16Q9H269 839 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 LRMDAQ9H2I8 198 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 THAP9Q9H5L6 903 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 ZNF304Q9HCX3 659 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 STK32BQ9NY57 414 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 TMOD3Q9NYL9 352 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 SATB2Q9UPW6 733 aa10.02□□□□□ -0.8
PTPRA-204ENST00000380393 DIS3Q9Y2L1 958 aaKnown RBP10.02□□□□□ -0.8
PTPRA-204ENST00000380393 USP42Q9H9J4 1324 aaKnown RBP10.02□□□□□ -0.81
PTPRA-204ENST00000380393 O00370 1275 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 CYTH3O43739 400 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 FDPSP14324 419 aaKnown RBP10.02□□□□□ -0.81
PTPRA-204ENST00000380393 FOSL1P15407 271 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 EPHB2P29323 1055 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 PHBP35232 272 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 DNA2P51530 1060 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 TFCP2Q12800 502 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 ITGA9Q13797 1035 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 MYLK3Q32MK0 819 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 SPATA1Q5VX52 437 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 SHC4Q6S5L8 630 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 TMC4Q7Z404 712 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 DTX3LQ8TDB6 740 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 CCDC85AQ96PX6 553 aaPredicted RBP10.02□□□□□ -0.81
PTPRA-204ENST00000380393 AS3MTQ9HBK9 375 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 NDUFA13Q9P0J0 144 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 HPSEQ9Y251 543 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 CAPN6Q9Y6Q1 641 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 H7C1D1 291 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 B3GALNT1O75752 331 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 PRLRP16471 622 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 SUZ12Q15022 739 aaKnown RBP10.02□□□□□ -0.81
PTPRA-204ENST00000380393 KHDC1Q4VXA5 237 aaKnown RBP10.02□□□□□ -0.81
PTPRA-204ENST00000380393 INTS8Q75QN2 995 aaKnown RBP10.02□□□□□ -0.81
PTPRA-204ENST00000380393 NLRP9Q7RTR0 991 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 HAUS7Q99871 368 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 ERP44Q9BS26 406 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 QTRT2Q9H974 415 aaKnown RBP10.02□□□□□ -0.81
PTPRA-204ENST00000380393 SLIT2O94813 1529 aa10.02□□□□□ -0.81
PTPRA-204ENST00000380393 COL22A1Q8NFW1 1626 aaPredicted RBP10.01□□□□□ -0.81
PTPRA-204ENST00000380393 SFI1A8K8P3 1242 aa10.01□□□□□ -0.81
PTPRA-204ENST00000380393 E7EWF7 191 aa10.01□□□□□ -0.81
PTPRA-204ENST00000380393 GRM8O00222 908 aa10.01□□□□□ -0.81
PTPRA-204ENST00000380393 XPOTO43592 962 aaKnown RBP10.01□□□□□ -0.81
PTPRA-204ENST00000380393 NCK2O43639 380 aa10.01□□□□□ -0.81
PTPRA-204ENST00000380393 OAS1P00973 400 aaKnown RBP10.01□□□□□ -0.81
PTPRA-204ENST00000380393 CYP1A2P05177 515 aa10.01□□□□□ -0.81
PTPRA-204ENST00000380393 TUBA4AP68366 448 aa10.01□□□□□ -0.81
PTPRA-204ENST00000380393 CYP27A1Q02318 531 aa10.01□□□□□ -0.81
PTPRA-204ENST00000380393 PPP2R5BQ15173 497 aa10.01□□□□□ -0.81
PTPRA-204ENST00000380393 ADRM1Q16186 407 aa10.01□□□□□ -0.81
PTPRA-204ENST00000380393 WASHC4Q2M389 1173 aa10.01□□□□□ -0.81
PTPRA-204ENST00000380393 SH3TC2Q8TF17 1288 aa10.01□□□□□ -0.81
PTPRA-204ENST00000380393 VPS50Q96JG6 964 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms