RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 SH3TC2Q8TF17 1288 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 VPS11Q9H270 941 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 RNF103O00237 685 aa12.33□□□□□ -0.43
VPS13A-205ENST00000376636 GRK2P25098 689 aa12.33□□□□□ -0.43
VPS13A-205ENST00000376636 DDHD1Q8NEL9 900 aa12.33□□□□□ -0.43
VPS13A-205ENST00000376636 RPRD1BQ9NQG5 326 aaKnown RBP12.33□□□□□ -0.43
VPS13A-205ENST00000376636 PRXQ9BXM0 1461 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 M0R2C6 588 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 EIF4A3P38919 411 aaKnown RBP12.33□□□□□ -0.44
VPS13A-205ENST00000376636 MRPS35P82673 323 aaKnown RBP12.33□□□□□ -0.44
VPS13A-205ENST00000376636 HEATR6Q6AI08 1181 aaKnown RBP12.33□□□□□ -0.44
VPS13A-205ENST00000376636 ERICH1Q86X53 443 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 THEM5Q8N1Q8 247 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 FOPNLQ96NB1 174 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 AMNQ9BXJ7 453 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 ABCB6Q9NP58 842 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 ADAM30Q9UKF2 790 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 HNRNPH2P55795 449 aaKnown RBP12.33□□□□□ -0.44
VPS13A-205ENST00000376636 ICA1Q05084 483 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 PCDHA4Q9UN74 947 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 DYTNA2CJ06 578 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 GGPS1O95749 300 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 CDO1Q16878 200 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 RCSD1Q6JBY9 416 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 PARD3Q8TEW0 1356 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.33□□□□□ -0.44
VPS13A-205ENST00000376636 DTNBO60941 627 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 SERPINB3P29508 390 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 ELF1P32519 619 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 CHRNA2Q15822 529 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 RABGAP1LQ5R372 815 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 NPATQ14207 1427 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 TEX28O15482 410 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 VAMP4O75379 141 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 DDI1Q8WTU0 396 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 CASP10Q92851 521 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 MRPL48Q96GC5 212 aaKnown RBP12.33□□□□□ -0.44
VPS13A-205ENST00000376636 FASTKD1Q53R41 847 aaKnown RBP12.33□□□□□ -0.44
VPS13A-205ENST00000376636 USP28Q96RU2 1077 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 STON1Q9Y6Q2 735 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 ADGBQ8N7X0 1667 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 PRAMEP78395 509 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 PRKCQQ04759 706 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 CDCA7Q9BWT1 371 aaPredicted RBP12.33□□□□□ -0.44
VPS13A-205ENST00000376636 PSD3Q9NYI0 1048 aa12.33□□□□□ -0.44
VPS13A-205ENST00000376636 HSPA9P38646 679 aaKnown RBP12.32□□□□□ -0.44
VPS13A-205ENST00000376636 ZWILCHQ9H900 591 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 DMAP1Q9NPF5 467 aaPredicted RBP12.32□□□□□ -0.44
VPS13A-205ENST00000376636 NPM3O75607 178 aaKnown RBP12.32□□□□□ -0.44
VPS13A-205ENST00000376636 CAPN1P07384 714 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 KPNB1Q14974 876 aaKnown RBP12.32□□□□□ -0.44
VPS13A-205ENST00000376636 CHMP1BQ7LBR1 199 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 PDCD6IPQ8WUM4 868 aaKnown RBP12.32□□□□□ -0.44
VPS13A-205ENST00000376636 AP5M1Q9H0R1 490 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 UBAP1Q9NZ09 502 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 E4F1Q66K89 784 aaPredicted RBP12.32□□□□□ -0.44
VPS13A-205ENST00000376636 KDM5BQ9UGL1 1544 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 CFAP69A5D8W1 941 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 LDHAP00338 332 aaKnown RBP12.32□□□□□ -0.44
VPS13A-205ENST00000376636 GADL1Q6ZQY3 521 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 CYTH3O43739 400 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 ATP5JP18859 108 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 VIPAS39Q9H9C1 493 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 SARS2Q9NP81 518 aaKnown RBP12.32□□□□□ -0.44
VPS13A-205ENST00000376636 SAC3D1A6NKF1 404 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 S100A9P06702 114 aaKnown RBP12.32□□□□□ -0.44
VPS13A-205ENST00000376636 KCTD2Q14681 263 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 RNF26Q9BY78 433 aaPredicted RBP12.32□□□□□ -0.44
VPS13A-205ENST00000376636 SMARCAL1Q9NZC9 954 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 PCDHB8Q9UN66 801 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 TFDP2Q14188 446 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 ANAPC7Q9UJX3 599 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 APPL1Q9UKG1 709 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 EIF4A2Q14240 407 aaKnown RBP12.32□□□□□ -0.44
VPS13A-205ENST00000376636 FAM47AQ5JRC9 791 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 OR6B2Q6IFH4 312 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 CDH24Q86UP0 819 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 NLRP14Q86W24 1093 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 VSTM4Q8IW00 320 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 DBNDD2Q9BQY9 259 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 SLITRK6Q9H5Y7 841 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 THEMIS2Q5TEJ8 643 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 TMC5Q6UXY8 1006 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 IKBIPQ70UQ0 350 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 DNMBPQ6XZF7 1577 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 MRC2Q9UBG0 1479 aa12.32□□□□□ -0.44
VPS13A-205ENST00000376636 RGS5O15539 181 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 NUP107P57740 925 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 LAMB3Q13751 1172 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 GPKOWQ92917 476 aaPredicted RBP eCLIP12.31□□□□□ -0.445e-9■■■□□ 17.4
VPS13A-205ENST00000376636 OSBPL9Q96SU4 736 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 NXF1Q9UBU9 619 aaKnown RBP12.31□□□□□ -0.44
VPS13A-205ENST00000376636 UBAP1LF5GYI3 381 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 CHRNA3P32297 505 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 TALDO1P37837 337 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 NCF4Q15080 339 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 SLC10A5Q5PT55 438 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 MYO1GB0I1T2 1018 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 CYP4A11Q02928 519 aa12.31□□□□□ -0.44
VPS13A-205ENST00000376636 FBXO38Q6PIJ6 1188 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms