RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 PKN1Q16512 942 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 BRDTQ58F21 947 aaPredicted RBP4.08□□□□□ -1.76
MCF2-202ENST00000370573 FBXW10Q5XX13 1052 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 LARP1BQ659C4 914 aaKnown RBP4.08□□□□□ -1.76
MCF2-202ENST00000370573 DCAF15Q66K64 600 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 TTBK2Q6IQ55 1244 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 AGMOQ6ZNB7 445 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 SV2BQ7L1I2 683 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 ZAR1Q86SH2 424 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 PNMA8AQ86V59 439 aaPredicted RBP4.08□□□□□ -1.76
MCF2-202ENST00000370573 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.08□□□□□ -1.76
MCF2-202ENST00000370573 GPBAR1Q8TDU6 330 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 SHISA4Q96DD7 197 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 CHAMP1Q96JM3 812 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 MAP3K14Q99558 947 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 SLC26A6Q9BXS9 759 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 UBA5Q9GZZ9 404 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 PIDD1Q9HB75 910 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 DISC1Q9NRI5 854 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 ACTR10Q9NZ32 417 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 CRIM1Q9NZV1 1036 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 PPM1HQ9ULR3 514 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 MTMR6Q9Y217 621 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 MYH4Q9Y623 1939 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 CCDC196A0A1B0GTZ2 297 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 KLRF2D3W0D1 207 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 F5H6K3 240 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 PRPF3O43395 683 aaKnown RBP4.08□□□□□ -1.76
MCF2-202ENST00000370573 CYTH3O43739 400 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 STX6O43752 255 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 ASNSP08243 561 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 HMGN5P82970 282 aaKnown RBP4.08□□□□□ -1.76
MCF2-202ENST00000370573 KLRC3Q07444 240 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 SSRP1Q08945 709 aaKnown RBP4.08□□□□□ -1.76
MCF2-202ENST00000370573 ZNF543Q08ER8 600 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 MTERF2Q49AM1 385 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 SLFN13Q68D06 897 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 RUFY4Q6ZNE9 571 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 CDC37L1Q7L3B6 337 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 SCYL3Q8IZE3 742 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 GIMAP7Q8NHV1 300 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 CTCFLQ8NI51 663 aaPredicted RBP4.08□□□□□ -1.76
MCF2-202ENST00000370573 GATA6Q92908 595 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 WRNIP1Q96S55 665 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 NUP88Q99567 741 aaPredicted RBP4.08□□□□□ -1.76
MCF2-202ENST00000370573 C1GALT1Q9NS00 363 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 HOMER2Q9NSB8 354 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 RBM28Q9NW13 759 aaKnown RBP4.08□□□□□ -1.76
MCF2-202ENST00000370573 ATP8A1Q9Y2Q0 1164 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 TMX2Q9Y320 296 aa4.08□□□□□ -1.76
MCF2-202ENST00000370573 FRMPD2Q68DX3 1309 aaPredicted RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 FAM221AA4D161 298 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 CYP26A1O43174 497 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 CDKL5O76039 1030 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 NDUFB10O96000 172 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 PARP1P09874 1014 aaKnown RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 ZSCAN22P10073 491 aaPredicted RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 NME2P22392 152 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 KIF5BP33176 963 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 NUCB2P80303 420 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 GUCY1B3Q02153 619 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 CLCQ05315 142 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 NOL9Q5SY16 702 aaKnown RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 MRM1Q6IN84 353 aaKnown RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 CPLX2Q6PUV4 134 aaKnown RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 KCTD1Q719H9 257 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 FAM184AQ8NB25 1140 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 GMCL1P1Q8NEA9 526 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 MORC4Q8TE76 937 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 PIBF1Q8WXW3 757 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 TNPO1Q92973 898 aaKnown RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 HOOK2Q96ED9 719 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 CLMNQ96JQ2 1002 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 ALG1Q9BT22 464 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 VAT1LQ9HCJ6 419 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 MAGEC2Q9UBF1 373 aaPredicted RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 PCDHGC5Q9Y5F6 944 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 SNCAIPQ9Y6H5 919 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 STK36Q9NRP7 1315 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 ATAD5Q96QE3 1844 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 DCDC2CA8MYV0 355 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 ADAMTS3O15072 1205 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 PDCP20941 246 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 BMP6P22004 513 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 MCM4P33991 863 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 SLC16A2P36021 539 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 GNAQP50148 359 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 SPP2Q13103 211 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 VGLL4Q14135 290 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 CBX2Q14781 532 aaPredicted RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 ZYXQ15942 572 aaKnown RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 MAP9Q49MG5 647 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 ASPRV1Q53RT3 343 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 LDHDQ86WU2 507 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 LSRQ86X29 649 aaPredicted RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 THNSL2Q86YJ6 484 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 SMYD4Q8IYR2 804 aaPredicted RBP4.07□□□□□ -1.76
MCF2-202ENST00000370573 SPICE1Q8N0Z3 855 aa4.07□□□□□ -1.76
MCF2-202ENST00000370573 FBXO18Q8NFZ0 1043 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms