RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 SAYSD1Q9NPB0 183 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 RALAP11233 206 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 ZNF280CQ8ND82 737 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 PBKQ96KB5 322 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 SEPT5Q99719 369 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-201ENST00000359947 KIAA1586Q9HCI6 787 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 YWHABP31946 246 aaKnown RBP16.62■□□□□ 0.25
PTPRF-201ENST00000359947 PAPOLAP51003 745 aaKnown RBP16.62■□□□□ 0.25
PTPRF-201ENST00000359947 LBRQ14739 615 aaKnown RBP16.62■□□□□ 0.25
PTPRF-201ENST00000359947 TAF1BQ53T94 588 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-201ENST00000359947 FAM102AQ5T9C2 384 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-201ENST00000359947 MTIF3Q9H2K0 278 aaKnown RBP16.62■□□□□ 0.25
PTPRF-201ENST00000359947 SUN1O94901 812 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 APOEP02649 317 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 HSPA6P17066 643 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 GMPSP49915 693 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-201ENST00000359947 ZBED6P86452 979 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 EZH2Q15910 746 aaKnown RBP16.62■□□□□ 0.25
PTPRF-201ENST00000359947 PARK7Q99497 189 aaKnown RBP16.62■□□□□ 0.25
PTPRF-201ENST00000359947 HERC5Q9UII4 1024 aaKnown RBP16.62■□□□□ 0.25
PTPRF-201ENST00000359947 TMEM247A6NEH6 219 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 BAATQ14032 418 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-201ENST00000359947 CCHCR1Q8TD31 782 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 LY9Q9HBG7 655 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 CDC23Q9UJX2 597 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 PRPF4O43172 522 aaKnown RBP eCLIP16.61■□□□□ 0.258e-7■■■□□ 17.8
PTPRF-201ENST00000359947 KITP10721 976 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 RGL1Q9NZL6 768 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 AGO2Q9UKV8 859 aaKnown RBP16.61■□□□□ 0.25
PTPRF-201ENST00000359947 DOLKQ9UPQ8 538 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 SYNMO15061 1565 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 NDUFA10O95299 355 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 GGPS1O95749 300 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 CRB1P82279 1406 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 ANP32DO95626 131 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 SERPIND1P05546 499 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 TAC1P20366 129 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 NUDT18Q6ZVK8 323 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 ULK4Q96C45 1275 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 GTSE1Q9NYZ3 720 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 SHROOM2Q13796 1616 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 KCNH2Q12809 1159 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 GRM4Q14833 912 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 SIRT2Q8IXJ6 389 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 FAM20AQ96MK3 541 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 TTI1O43156 1089 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 RESTQ13127 1097 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 SYCP2LQ5T4T6 812 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 TTC23LQ6PF05 361 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 WHAMMQ8TF30 809 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 PCDHA10Q9Y5I2 948 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 JCADQ9P266 1359 aa16.61■□□□□ 0.25
PTPRF-201ENST00000359947 PDGFRBP09619 1106 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 DPEP1P16444 411 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 PTK2BQ14289 1009 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 ZNF513Q8N8E2 541 aaPredicted RBP16.6■□□□□ 0.25
PTPRF-201ENST00000359947 OR6P1Q8NGX9 317 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 TMEM39BQ9GZU3 492 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 POLRMTO00411 1230 aaKnown RBP16.6■□□□□ 0.25
PTPRF-201ENST00000359947 HSPA4LO95757 839 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 SYF2O95926 243 aaKnown RBP16.6■□□□□ 0.25
PTPRF-201ENST00000359947 GFPT1Q06210 699 aaPredicted RBP16.6■□□□□ 0.25
PTPRF-201ENST00000359947 NECTIN1Q15223 517 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 TRIM42Q8IWZ5 723 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 NUP85Q9BW27 656 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 Q9H521 79 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 STAP1Q9ULZ2 295 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 MAGI3Q5TCQ9 1506 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 ATP1A3P13637 1013 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 PALMO75781 387 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 FAM133BQ5BKY9 247 aaKnown RBP16.6■□□□□ 0.25
PTPRF-201ENST00000359947 LINC00116Q8NCU8 138 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.6■□□□□ 0.25
PTPRF-201ENST00000359947 TTC17Q96AE7 1141 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 ATXN7L3BQ96GX2 97 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 VPS11Q9H270 941 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 HNRNPCL2B2RXH8 293 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 HNRNPCL1O60812 293 aaKnown RBP16.6■□□□□ 0.25
PTPRF-201ENST00000359947 CDC27P30260 824 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 KNOP1Q1ED39 458 aaKnown RBP16.6■□□□□ 0.25
PTPRF-201ENST00000359947 TMEM259Q4ZIN3 620 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 EFHC2Q5JST6 749 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 FMO2Q99518 471 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 BARHL2Q9NY43 387 aa16.6■□□□□ 0.25
PTPRF-201ENST00000359947 ZRANB2O95218 330 aaKnown RBP eCLIP16.59■□□□□ 0.253e-7■■■■■ 46.6
PTPRF-201ENST00000359947 PRR5LQ6MZQ0 368 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 RCOR1Q9UKL0 485 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 RPAP1Q9BWH6 1393 aaPredicted RBP16.59■□□□□ 0.25
PTPRF-201ENST00000359947 CCDC195A0A1B0GUA6 201 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 TRPA1O75762 1119 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 PRCPP42785 496 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 IFT88Q13099 833 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 ANKRD40Q6AI12 368 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 TRIM49P0CI25 452 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 TRIM49CP0CI26 452 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 EEF1B2P24534 225 aaKnown RBP16.59■□□□□ 0.25
PTPRF-201ENST00000359947 OR1G1P47890 313 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 SUFUQ9UMX1 484 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 IKBKBO14920 756 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 ALDH1A1P00352 501 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms