RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 SMTNP53814 917 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 RTP1P59025 263 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 LACTBP83111 547 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 KCNMA1Q12791 1236 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 KCNH2Q12809 1159 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 CAPSQ13938 189 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 MTF1Q14872 753 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 FKBP15Q5T1M5 1219 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 TCERG1LQ5VWI1 586 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 IQSEC1Q6DN90 963 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 MAP4K3Q8IVH8 894 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 FAM186BQ8IYM0 893 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 TRPV1Q8NER1 839 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 PRPF31Q8WWY3 499 aaKnown RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 SOCS4Q8WXH5 440 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 EMID1Q96A84 441 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 SAAL1Q96ER3 474 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 BORCS6Q96GS4 357 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 FAM167AQ96KS9 214 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 IFT74Q96LB3 600 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 PCMTD1Q96MG8 357 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 ERGIC2Q96RQ1 377 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 TMEM206Q9H813 350 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 CREBZFQ9NS37 354 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 FAM207AQ9NSI2 230 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 AGPAT5Q9NUQ2 364 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 ERAP1Q9NZ08 941 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 ARHGAP28Q9P2N2 729 aa4.54□□□□□ -1.68
MCF2-201ENST00000338585 ARMCX3Q9UH62 379 aaPredicted RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 GNEQ9Y223 722 aaKnown RBP4.54□□□□□ -1.68
MCF2-201ENST00000338585 IGKV6-21A0A0C4DH24 114 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 TTLL13PA6NNM8 815 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 H3BRB1 525 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 SLC16A3O15427 465 aaKnown RBP4.53□□□□□ -1.68
MCF2-201ENST00000338585 EXOC3O60645 756 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 TRIM49P0CI25 452 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 TRIM49CP0CI26 452 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 EPB41P11171 864 aaKnown RBP4.53□□□□□ -1.68
MCF2-201ENST00000338585 KRT9P35527 623 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 PSMC2P35998 433 aaKnown RBP4.53□□□□□ -1.68
MCF2-201ENST00000338585 FLT3LGP49771 235 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 CLCN3P51790 818 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 CHMP4BP1P59074 171 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 DLG4P78352 724 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 TRIM32Q13049 653 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 ALCAMQ13740 583 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 NOLC1Q14978 699 aaKnown RBP eCLIP4.53□□□□□ -1.68
MCF2-201ENST00000338585 NFIL3Q16649 462 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 E4F1Q66K89 784 aaPredicted RBP4.53□□□□□ -1.68
MCF2-201ENST00000338585 FRMD5Q7Z6J6 570 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 TLK2Q86UE8 772 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 MSL3Q8N5Y2 521 aaKnown RBP4.53□□□□□ -1.68
MCF2-201ENST00000338585 DEPTORQ8TB45 409 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 TRIB2Q92519 343 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 SLC35C1Q96A29 364 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 BAG1Q99933 345 aaPredicted RBP4.53□□□□□ -1.68
MCF2-201ENST00000338585 TTYH3Q9C0H2 523 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 TUT1Q9H6E5 874 aaKnown RBP4.53□□□□□ -1.68
MCF2-201ENST00000338585 MMRN2Q9H8L6 949 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 C17orf75Q9HAS0 396 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 ABHD10Q9NUJ1 306 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 TRMT1Q9NXH9 659 aaKnown RBP4.53□□□□□ -1.68
MCF2-201ENST00000338585 HSPBP1Q9NZL4 362 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.53□□□□□ -1.68
MCF2-201ENST00000338585 MGAMO43451 1857 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 SOWAHDA6NJG2 315 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 HNRNPDLO14979 420 aaKnown RBP4.53□□□□□ -1.68
MCF2-201ENST00000338585 HBP1O60381 514 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 PPFIA4O75335 1185 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 TRPA1O75762 1119 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 C22orf31O95567 290 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 ADRB2P07550 413 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 SRGAP2CP0DJJ0 459 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 ACTN1P12814 892 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 XRCC5P13010 732 aaKnown RBP4.53□□□□□ -1.68
MCF2-201ENST00000338585 TRIM21P19474 475 aaKnown RBP4.53□□□□□ -1.68
MCF2-201ENST00000338585 YY1P25490 414 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 KLRC1P26715 233 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 CNGA1P29973 690 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 TIE1P35590 1138 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 NAMPTP43490 491 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 SLC26A2P50443 739 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 APLP1P51693 650 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 FCGRTP55899 365 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 BEX3Q00994 111 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 PRKCZQ05513 592 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 LAMTOR4Q0VGL1 99 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 IFNLR1Q8IU57 520 aaPredicted RBP4.53□□□□□ -1.68
MCF2-201ENST00000338585 CBWD2Q8IUF1 395 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 SLC9A9Q8IVB4 645 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 METTL13Q8N6R0 699 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 GOLGA5Q8TBA6 731 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 PLEKHO2Q8TD55 490 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 FAM84AQ96KN4 292 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 PANX2Q96RD6 677 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 PPP1R16BQ96T49 567 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 CAPN11Q9UMQ6 739 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 FRMD4BQ9Y2L6 1034 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 PCNTO95613 3336 aa4.53□□□□□ -1.68
MCF2-201ENST00000338585 MYADML2A6NDP7 307 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms