RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TTBK2Q6IQ55 1244 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 LONP2Q86WA8 852 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 SFR1Q86XK3 245 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 C17orf50Q8WW18 174 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 CDKL2Q92772 493 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 MED10Q9BTT4 135 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 SLC26A6Q9BXS9 759 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 PITPNM3Q9BZ71 974 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 RPRD1BQ9NQG5 326 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 BATF3Q9NR55 127 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 LMCD1Q9NZU5 365 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 SEL1LQ9UBV2 794 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 NRBP1Q9UHY1 535 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 EVLQ9UI08 416 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 APOL1O14791 398 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 MFAP3LO75121 409 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 HSPA6P17066 643 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 UBA1P22314 1058 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 MAGEA12P43365 314 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 NUP107P57740 925 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 NEDD8Q15843 81 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 BRDTQ58F21 947 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 TRIQKQ629K1 86 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 NMD3Q96D46 503 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 SENP6Q9GZR1 1112 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 EDARQ9UNE0 448 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 LRRC53A6NM62 1247 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 IFIT3O14879 490 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 HEXIM1O94992 359 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 FOSP01100 380 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 C6orf222P0C671 652 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 MARCKSP29966 332 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 S100ZQ8WXG8 99 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 TUBB6Q9BUF5 446 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 AVENQ9NQS1 362 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 ZRANB1Q9UGI0 708 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 NOB1Q9ULX3 412 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 MGAT4AQ9UM21 535 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 BTBD3Q9Y2F9 522 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 CNTLNQ9NXG0 1405 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 M0R036 132 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 LPXNO60711 386 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 ECHS1P30084 290 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 CASRP41180 1078 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 RASSF3Q86WH2 238 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 CLEC4FQ8N1N0 589 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 GALNT4Q8N4A0 578 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 PNPLA8Q9NP80 782 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 CLEC4AQ9UMR7 237 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 TIMM44O43615 452 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 NARSO43776 548 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 GAP43P17677 238 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 YWHAZP63104 245 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 RINT1Q6NUQ1 792 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 GADL1Q6ZQY3 521 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 TMEM110Q86TL2 294 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 BBS5Q8N3I7 341 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 APOL2Q9BQE5 337 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF287Q9HBT7 754 aa8.09□□□□□ -1.11
LIMCH1-201ENST00000313860 CCDC195A0A1B0GUA6 201 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 ARHGEF37A1IGU5 675 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 TMCC2O75069 709 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 TEDDM1Q5T9Z0 273 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 PEX26Q7Z412 305 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 PARP9Q8IXQ6 854 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 STAMBPL1Q96FJ0 436 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 CCT8L2Q96SF2 557 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 PFDN5Q99471 154 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 NUDT12Q9BQG2 462 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 PYM1Q9BRP8 204 aaKnown RBP8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 BCL2L12Q9HB09 334 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 XPR1Q9UBH6 696 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 PCDHA5Q9Y5H7 936 aa8.09□□□□□ -1.12
LIMCH1-201ENST00000313860 EVC2Q86UK5 1308 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 CCDC182A6NF36 153 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 PSTPIP1O43586 416 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 GDI2P50395 445 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 DRG2P55039 364 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 KPNB1Q14974 876 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 ZMYND11Q15326 602 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 MTFR1Q15390 333 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 COMMD2Q86X83 199 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 CNKSR1Q969H4 720 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 RAB20Q9NX57 234 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF223Q9UK11 482 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 E2F8A0AVK6 867 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 ATF2P15336 505 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 SLCO1A2P46721 670 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 AP3B2Q13367 1082 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 LPIN1Q14693 890 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 RPS6KA1Q15418 735 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 CADPS2Q86UW7 1296 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 SCAIQ8N9R8 606 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 HPS1Q92902 700 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF594Q96JF6 807 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 FSD1LQ9BXM9 530 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 CCDC59Q9P031 241 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 STK39Q9UEW8 545 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 CLCA2Q9UQC9 943 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms