RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 UBA7P41226 1012 aa13.36□□□□□ -0.27
SCFD1-201ENST00000311943 PTENP60484 403 aa13.36□□□□□ -0.27
SCFD1-201ENST00000311943 STK38Q15208 465 aa13.36□□□□□ -0.27
SCFD1-201ENST00000311943 UBXN11Q5T124 520 aa13.36□□□□□ -0.27
SCFD1-201ENST00000311943 USP38Q8NB14 1042 aa13.36□□□□□ -0.27
SCFD1-201ENST00000311943 RAB34Q9BZG1 259 aa13.36□□□□□ -0.27
SCFD1-201ENST00000311943 RNF39Q9H2S5 420 aa13.36□□□□□ -0.27
SCFD1-201ENST00000311943 PRDM6Q9NQX0 595 aa13.36□□□□□ -0.27
SCFD1-201ENST00000311943 SQORQ9Y6N5 450 aa13.36□□□□□ -0.27
SCFD1-201ENST00000311943 B4GALT3O60512 393 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 TSPAN1O60635 241 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 LPXNO60711 386 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 CASP1P29466 404 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 CCDC85BQ15834 202 aaPredicted RBP13.35□□□□□ -0.27
SCFD1-201ENST00000311943 CLLU1OSQ5K130 101 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 LRRC55Q6ZSA7 311 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 ZNF689Q96CS4 500 aaPredicted RBP13.35□□□□□ -0.27
SCFD1-201ENST00000311943 MRPL42Q9Y6G3 142 aaKnown RBP13.35□□□□□ -0.27
SCFD1-201ENST00000311943 C5orf42Q9H799 3197 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 SPTLC2O15270 562 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 ARF4P18085 180 aaPredicted RBP13.35□□□□□ -0.27
SCFD1-201ENST00000311943 IGFBP4P22692 258 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 DDIT3P35638 169 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 PEX3P56589 373 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 RAB30Q15771 203 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 AXDND1Q5T1B0 1012 aaPredicted RBP13.35□□□□□ -0.27
SCFD1-201ENST00000311943 SLC24A5Q71RS6 500 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 TAS1R3Q7RTX0 852 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 ZNF410Q86VK4 478 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 TMEM130Q8N3G9 435 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 PCDHA7Q9UN72 937 aa13.35□□□□□ -0.27
SCFD1-201ENST00000311943 MYO7AQ13402 2215 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 NCLP19338 710 aaKnown RBP13.34□□□□□ -0.27
SCFD1-201ENST00000311943 LONP1P36776 959 aaKnown RBP13.34□□□□□ -0.27
SCFD1-201ENST00000311943 SARSP49591 514 aaKnown RBP13.34□□□□□ -0.27
SCFD1-201ENST00000311943 TWF2Q6IBS0 349 aaKnown RBP13.34□□□□□ -0.27
SCFD1-201ENST00000311943 DYMQ7RTS9 669 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 ECHDC2Q86YB7 292 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 SYT2Q8N9I0 419 aaPredicted RBP13.34□□□□□ -0.27
SCFD1-201ENST00000311943 RASSF8Q8NHQ8 419 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 TCP11Q8WWU5 503 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 AGPAT5Q9NUQ2 364 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 CACNG4Q9UBN1 327 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 INSL6Q9Y581 213 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 PCDHGC5Q9Y5F6 944 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 PRRC2BQ5JSZ5 2229 aaKnown RBP13.34□□□□□ -0.27
SCFD1-201ENST00000311943 TCHHQ07283 1943 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 TBKBP1A7MCY6 615 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 EEF1DP3Q658K8 133 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 ZNF598Q86UK7 904 aaKnown RBP13.34□□□□□ -0.27
SCFD1-201ENST00000311943 MICALL1Q8N3F8 863 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 KRI1Q8N9T8 703 aaKnown RBP13.34□□□□□ -0.27
SCFD1-201ENST00000311943 SP7Q8TDD2 431 aaPredicted RBP13.34□□□□□ -0.27
SCFD1-201ENST00000311943 HELQQ8TDG4 1101 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 CDK5RAP3Q96JB5 506 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 REEP2Q9BRK0 252 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 APOL6Q9BWW8 343 aa13.34□□□□□ -0.27
SCFD1-201ENST00000311943 CCDC169A6NNP5 214 aa13.33□□□□□ -0.28
SCFD1-201ENST00000311943 SLC16A4O15374 487 aa13.33□□□□□ -0.28
SCFD1-201ENST00000311943 EFCAB14O75071 495 aa13.33□□□□□ -0.28
SCFD1-201ENST00000311943 SLC34A2O95436 690 aa13.33□□□□□ -0.28
SCFD1-201ENST00000311943 ZSCAN20P17040 1043 aaPredicted RBP13.33□□□□□ -0.28
SCFD1-201ENST00000311943 NPTX2P47972 431 aa13.33□□□□□ -0.28
SCFD1-201ENST00000311943 FAM189BP81408 668 aa13.33□□□□□ -0.28
SCFD1-201ENST00000311943 BTG3Q14201 252 aaPredicted RBP13.33□□□□□ -0.28
SCFD1-201ENST00000311943 GPBP1Q86WP2 473 aa13.33□□□□□ -0.28
SCFD1-201ENST00000311943 SMG8Q8ND04 991 aaKnown RBP13.33□□□□□ -0.28
SCFD1-201ENST00000311943 RAD54LQ92698 747 aa13.33□□□□□ -0.28
SCFD1-201ENST00000311943 JPH2Q9BR39 696 aaPredicted RBP13.33□□□□□ -0.28
SCFD1-201ENST00000311943 FTHL17Q9BXU8 183 aa13.33□□□□□ -0.28
SCFD1-201ENST00000311943 FGFBP2Q9BYJ0 223 aa13.33□□□□□ -0.28
SCFD1-201ENST00000311943 ALG13Q9NP73 1137 aaKnown RBP13.33□□□□□ -0.28
SCFD1-201ENST00000311943 PCDHB7Q9Y5E2 793 aa13.33□□□□□ -0.28
SCFD1-201ENST00000311943 FNDC1Q4ZHG4 1894 aaPredicted RBP13.33□□□□□ -0.28
SCFD1-201ENST00000311943 KIAA1671Q9BY89 1806 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 COL4A4P53420 1690 aaPredicted RBP13.32□□□□□ -0.28
SCFD1-201ENST00000311943 A0A0U1RQF3 1178 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 NT5C1B-RDH14C9J2C7 533 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 SFPQP23246 707 aaKnown RBP eCLIP13.32□□□□□ -0.28
SCFD1-201ENST00000311943 AKAP5P24588 427 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 DNAJB1P25685 340 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 PHKA2P46019 1235 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 MXD4Q14582 209 aaPredicted RBP13.32□□□□□ -0.28
SCFD1-201ENST00000311943 EPC2Q52LR7 807 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 GPR153Q6NV75 609 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 AGMOQ6ZNB7 445 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 NPAS4Q8IUM7 802 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 CEP120Q8N960 986 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 MCPH1Q8NEM0 835 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 RABGGTAQ92696 567 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 HPS3Q969F9 1004 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 AK8Q96MA6 479 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 CASD1Q96PB1 797 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 CCSER1Q9C0I3 900 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 CCDC113Q9H0I3 377 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 NXF3Q9H4D5 531 aaKnown RBP13.32□□□□□ -0.28
SCFD1-201ENST00000311943 ZHX3Q9H4I2 956 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 FAM105AQ9NUU6 356 aa13.32□□□□□ -0.28
SCFD1-201ENST00000311943 TYW1Q9NV66 732 aaKnown RBP13.32□□□□□ -0.28
SCFD1-201ENST00000311943 MIOSQ9NXC5 875 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms