RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 ECM1Q16610 540 aa18.14■□□□□ 0.49
LSM1-201ENST00000311351 MAEAQ7L5Y9 396 aa18.14■□□□□ 0.49
LSM1-201ENST00000311351 LRRC43Q8N309 656 aa18.14■□□□□ 0.49
LSM1-201ENST00000311351 POF1BQ8WVV4 589 aa18.14■□□□□ 0.49
LSM1-201ENST00000311351 NECAB3Q96P71 396 aaPredicted RBP18.14■□□□□ 0.49
LSM1-201ENST00000311351 PCDHGC5Q9Y5F6 944 aa18.14■□□□□ 0.49
LSM1-201ENST00000311351 BDP1A6H8Y1 2624 aa18.14■□□□□ 0.49
LSM1-201ENST00000311351 PP2D1A8MPX8 630 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 ASAP2O43150 1006 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 BMP1P13497 986 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 KCNA5P22460 613 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 GLRA2P23416 452 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 RPA1P27694 616 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 GTF2F1P35269 517 aaKnown RBP eCLIP18.13■□□□□ 0.49
LSM1-201ENST00000311351 ARL2P36404 184 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 CCT6AP40227 531 aaKnown RBP18.13■□□□□ 0.49
LSM1-201ENST00000311351 MXD4Q14582 209 aaPredicted RBP18.13■□□□□ 0.49
LSM1-201ENST00000311351 NAALADL2Q58DX5 795 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 HAUS3Q68CZ6 603 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 THNSL1Q8IYQ7 743 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 TRAIPQ9BWF2 469 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.13■□□□□ 0.49
LSM1-201ENST00000311351 FAM105AQ9NUU6 356 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 DBR1Q9UK59 544 aaKnown RBP18.13■□□□□ 0.49
LSM1-201ENST00000311351 PCDHB12Q9Y5F1 795 aa18.13■□□□□ 0.49
LSM1-201ENST00000311351 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.12■□□□□ 0.49
LSM1-201ENST00000311351 FGF18O76093 207 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 EOMESO95936 686 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 XRCC6P12956 609 aaKnown RBP eCLIP18.12■□□□□ 0.49
LSM1-201ENST00000311351 LAG3P18627 525 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 PTENP60484 403 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 HYAL1Q12794 435 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 TFDP1Q14186 410 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 IL17AQ16552 155 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 EP400NLQ6ZTU2 488 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 ADGRD2Q7Z7M1 963 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 SNX29Q8TEQ0 813 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 NACC1Q96RE7 527 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 UHRF1Q96T88 793 aaPredicted RBP18.12■□□□□ 0.49
LSM1-201ENST00000311351 AAASQ9NRG9 546 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 LRWD1Q9UFC0 647 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.12■□□□□ 0.49
LSM1-201ENST00000311351 MUC3AQ02505 3323 aa18.12■□□□□ 0.49
LSM1-201ENST00000311351 ARHGEF35A5YM69 484 aa18.11■□□□□ 0.49
LSM1-201ENST00000311351 H3BQ06 376 aaPredicted RBP18.11■□□□□ 0.49
LSM1-201ENST00000311351 INO80B-WBP1J3KQ70 363 aa18.11■□□□□ 0.49
LSM1-201ENST00000311351 TSPAN1O60635 241 aa18.11■□□□□ 0.49
LSM1-201ENST00000311351 ERLIN2O94905 339 aa18.11■□□□□ 0.49
LSM1-201ENST00000311351 HOXA11P31270 313 aaPredicted RBP18.11■□□□□ 0.49
LSM1-201ENST00000311351 RAB27AP51159 221 aa18.11■□□□□ 0.49
LSM1-201ENST00000311351 MBTD1Q05BQ5 628 aa18.11■□□□□ 0.49
LSM1-201ENST00000311351 UBXN11Q5T124 520 aa18.11■□□□□ 0.49
LSM1-201ENST00000311351 IGSF22Q8N9C0 903 aa18.11■□□□□ 0.49
LSM1-201ENST00000311351 PABPC5Q96DU9 382 aaKnown RBP18.11■□□□□ 0.49
LSM1-201ENST00000311351 CLDND1Q9NY35 253 aa18.11■□□□□ 0.49
LSM1-201ENST00000311351 INPP5FQ9Y2H2 1132 aa18.11■□□□□ 0.49
LSM1-201ENST00000311351 PCDHB2Q9Y5E7 798 aa18.11■□□□□ 0.49
LSM1-201ENST00000311351 CDC25AP30304 524 aa18.1■□□□□ 0.49
LSM1-201ENST00000311351 CUL4AQ13619 759 aa18.1■□□□□ 0.49
LSM1-201ENST00000311351 COL19A1Q14993 1142 aa18.1■□□□□ 0.49
LSM1-201ENST00000311351 AMHR2Q16671 573 aa18.1■□□□□ 0.49
LSM1-201ENST00000311351 RILPL1Q5EBL4 403 aa18.1■□□□□ 0.49
LSM1-201ENST00000311351 LARP1BQ659C4 914 aaKnown RBP18.1■□□□□ 0.49
LSM1-201ENST00000311351 PADI6Q6TGC4 694 aa18.1■□□□□ 0.49
LSM1-201ENST00000311351 KCNT2Q6UVM3 1135 aa18.1■□□□□ 0.49
LSM1-201ENST00000311351 IFNLR1Q8IU57 520 aaPredicted RBP18.1■□□□□ 0.49
LSM1-201ENST00000311351 BSNDQ8WZ55 320 aa18.1■□□□□ 0.49
LSM1-201ENST00000311351 CPB2Q96IY4 423 aa18.1■□□□□ 0.49
LSM1-201ENST00000311351 ZNF558Q96NG5 402 aa18.1■□□□□ 0.49
LSM1-201ENST00000311351 MRPL9Q9BYD2 267 aaKnown RBP18.1■□□□□ 0.49
LSM1-201ENST00000311351 LRRIQ4A6NIV6 560 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 LAD1O00515 517 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 LINC01565O15544 149 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 B4GALT5O43286 388 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 ZNF623O75123 536 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 SKIP12755 728 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 PRPHP41219 470 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 CSPP1Q1MSJ5 1256 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 LEXMQ3ZCV2 418 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 MCPH1Q8NEM0 835 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.09■□□□□ 0.49
LSM1-201ENST00000311351 EIF2AQ9BY44 585 aaKnown RBP18.09■□□□□ 0.49
LSM1-201ENST00000311351 RAB34Q9BZG1 259 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 BHMT2Q9H2M3 363 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 IGFLR1Q9H665 355 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 TLR9Q9NR96 1032 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 DDX19AQ9NUU7 478 aaKnown RBP18.09■□□□□ 0.49
LSM1-201ENST00000311351 KIAA1024Q9UPX6 916 aa18.09■□□□□ 0.49
LSM1-201ENST00000311351 B4GALT3O60512 393 aa18.08■□□□□ 0.48
LSM1-201ENST00000311351 MUTP22033 750 aa18.08■□□□□ 0.48
LSM1-201ENST00000311351 ERVFC1P60507 584 aa18.08■□□□□ 0.48
LSM1-201ENST00000311351 ATP2C1P98194 919 aaPredicted RBP18.08■□□□□ 0.48
LSM1-201ENST00000311351 UBE3AQ05086 875 aa18.08■□□□□ 0.48
LSM1-201ENST00000311351 DLX2Q07687 328 aaPredicted RBP18.08■□□□□ 0.48
LSM1-201ENST00000311351 PDIA5Q14554 519 aa18.08■□□□□ 0.48
LSM1-201ENST00000311351 GLB1LQ6UWU2 654 aa18.08■□□□□ 0.48
LSM1-201ENST00000311351 AGMOQ6ZNB7 445 aa18.08■□□□□ 0.48
LSM1-201ENST00000311351 RBM23Q86U06 439 aaKnown RBP18.08■□□□□ 0.48
LSM1-201ENST00000311351 POLD4Q9HCU8 107 aa18.08■□□□□ 0.48
LSM1-201ENST00000311351 TBC1D13Q9NVG8 400 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms