RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CHAMP1Q96JM3 812 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 VIPAS39Q9H9C1 493 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 NGRNQ9NPE2 291 aaKnown RBP14.72□□□□□ -0.05
CSPG4-201ENST00000308508 ADD3Q9UEY8 706 aaKnown RBP14.72□□□□□ -0.05
CSPG4-201ENST00000308508 SMG5Q9UPR3 1016 aaKnown RBP14.72□□□□□ -0.05
CSPG4-201ENST00000308508 LDHAP00338 332 aaKnown RBP14.72□□□□□ -0.05
CSPG4-201ENST00000308508 MRPL1Q9BYD6 325 aaKnown RBP14.72□□□□□ -0.05
CSPG4-201ENST00000308508 M0R3G1 203 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 KRT7P08729 469 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 ATP1A3P13637 1013 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 PRKG1Q13976 671 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 KIRREL3Q8IZU9 778 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 PRPF18Q99633 342 aaKnown RBP14.72□□□□□ -0.05
CSPG4-201ENST00000308508 ZNF556Q9HAH1 456 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 HEY1Q9Y5J3 304 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 BEGAINQ9BUH8 593 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 DDX56Q9NY93 547 aaKnown RBP14.72□□□□□ -0.05
CSPG4-201ENST00000308508 PCDHGB4Q9UN71 923 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 RASSF9O75901 435 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 ZBED8Q8IZ13 594 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 NUP85Q9BW27 656 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 HPCAL4Q9UM19 191 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 ENO1P06733 434 aaKnown RBP14.71□□□□□ -0.05
CSPG4-201ENST00000308508 MDH1P40925 334 aaKnown RBP14.71□□□□□ -0.05
CSPG4-201ENST00000308508 BCAMP50895 628 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 STAT4Q14765 748 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 CCDC137Q6PK04 289 aaKnown RBP14.71□□□□□ -0.05
CSPG4-201ENST00000308508 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.71□□□□□ -0.05
CSPG4-201ENST00000308508 OSBPL3Q9H4L5 887 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 A2MP01023 1474 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 C4BPBP20851 252 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 GFPT1Q06210 699 aaPredicted RBP14.71□□□□□ -0.05
CSPG4-201ENST00000308508 PDIA2Q13087 525 aaKnown RBP14.71□□□□□ -0.05
CSPG4-201ENST00000308508 GADL1Q6ZQY3 521 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 RASGRP4Q8TDF6 673 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 MYOM2P54296 1465 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 MYBL1P10243 752 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 ALDH18A1P54886 795 aaKnown RBP14.71□□□□□ -0.05
CSPG4-201ENST00000308508 KHDRBS2Q5VWX1 349 aaKnown RBP14.71□□□□□ -0.05
CSPG4-201ENST00000308508 NFRKBQ6P4R8 1299 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 LONP2Q86WA8 852 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 CLEC4FQ8N1N0 589 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 SYBUQ9NX95 663 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 PRPF3O43395 683 aaKnown RBP14.71□□□□□ -0.05
CSPG4-201ENST00000308508 EIF4A1P60842 406 aaKnown RBP14.71□□□□□ -0.05
CSPG4-201ENST00000308508 LRRC14Q15048 493 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 HIF1AQ16665 826 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 AARS2Q5JTZ9 985 aaKnown RBP14.71□□□□□ -0.05
CSPG4-201ENST00000308508 SCARA5Q6ZMJ2 495 aa14.71□□□□□ -0.05
CSPG4-201ENST00000308508 OSBPL5Q9H0X9 879 aaPredicted RBP14.71□□□□□ -0.05
CSPG4-201ENST00000308508 PLEKHG3A1L390 1219 aa14.71□□□□□ -0.06
CSPG4-201ENST00000308508 KDSRQ06136 332 aa14.71□□□□□ -0.06
CSPG4-201ENST00000308508 RESTQ13127 1097 aa14.71□□□□□ -0.06
CSPG4-201ENST00000308508 CCDC142Q17RM4 750 aa14.71□□□□□ -0.06
CSPG4-201ENST00000308508 DNAJC9Q8WXX5 260 aa14.71□□□□□ -0.06
CSPG4-201ENST00000308508 ARL8AQ96BM9 186 aa14.71□□□□□ -0.06
CSPG4-201ENST00000308508 GCNAQ96QF7 691 aa14.71□□□□□ -0.06
CSPG4-201ENST00000308508 NSMCE4AQ9NXX6 385 aa14.71□□□□□ -0.06
CSPG4-201ENST00000308508 MAST1Q9Y2H9 1570 aa14.71□□□□□ -0.06
CSPG4-201ENST00000308508 CIAO1O76071 339 aa14.71□□□□□ -0.06
CSPG4-201ENST00000308508 OTULINQ96BN8 352 aa14.71□□□□□ -0.06
CSPG4-201ENST00000308508 CEP95Q96GE4 821 aa14.71□□□□□ -0.06
CSPG4-201ENST00000308508 TTC7AQ9ULT0 858 aaPredicted RBP14.71□□□□□ -0.06
CSPG4-201ENST00000308508 AKAP10O43572 662 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 PPP1R37O75864 691 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 ROR1Q01973 937 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 HEATR6Q6AI08 1181 aaKnown RBP14.7□□□□□ -0.06
CSPG4-201ENST00000308508 KCNK16Q96T55 309 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 USP15Q9Y4E8 981 aaPredicted RBP14.7□□□□□ -0.06
CSPG4-201ENST00000308508 M0R2C6 588 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 EIF3HO15372 352 aaKnown RBP eCLIP14.7□□□□□ -0.06
CSPG4-201ENST00000308508 ZSCAN20P17040 1043 aaPredicted RBP14.7□□□□□ -0.06
CSPG4-201ENST00000308508 NR5A1Q13285 461 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 RINLQ6ZS11 566 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 MSTO1Q9BUK6 570 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 DNAJC12Q9UKB3 198 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 PPIP5K2O43314 1243 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 AGTP01019 485 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 PSAPP07602 524 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 BYSLQ13895 437 aaKnown RBP14.7□□□□□ -0.06
CSPG4-201ENST00000308508 FBXW10Q5XX13 1052 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 ZNF473Q8WTR7 871 aaKnown RBP14.7□□□□□ -0.06
CSPG4-201ENST00000308508 IP6K2Q9UHH9 426 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 GYG1P46976 350 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 FASTKD1Q53R41 847 aaKnown RBP14.7□□□□□ -0.06
CSPG4-201ENST00000308508 UNC13DQ70J99 1090 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 CCDC103Q8IW40 242 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 TMEM35BQ8NCS4 154 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 ZNF564Q8TBZ8 553 aaPredicted RBP14.7□□□□□ -0.06
CSPG4-201ENST00000308508 HEMGNQ9BXL5 484 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 TRIM54Q9BYV2 358 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 LGR6Q9HBX8 967 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 SH3GLB2Q9NR46 395 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.7□□□□□ -0.06
CSPG4-201ENST00000308508 TYK2P29597 1187 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 VCPP55072 806 aaKnown RBP14.7□□□□□ -0.06
CSPG4-201ENST00000308508 ITPRIPL1Q6GPH6 555 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 IFNAR1P17181 557 aa14.7□□□□□ -0.06
CSPG4-201ENST00000308508 TBC1D10BQ4KMP7 808 aaPredicted RBP14.7□□□□□ -0.06
CSPG4-201ENST00000308508 SYDE1Q6ZW31 735 aaPredicted RBP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms