RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 KRT2P35908 639 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 NRIP1P48552 1158 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 ERVFC1P60507 584 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 PLCB3Q01970 1234 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 SPIRE1Q08AE8 756 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 CLUL1Q15846 466 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 CLLU1OSQ5K130 101 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 KCNT2Q6UVM3 1135 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 RBM23Q86U06 439 aaKnown RBP10.89□□□□□ -0.67
VPS41-201ENST00000265745 RHPN2Q8IUC4 686 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 KSR1Q8IVT5 923 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 ADHFE1Q8IWW8 467 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 EXOC8Q8IYI6 725 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 SLFN12Q8IYM2 578 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 THNSL1Q8IYQ7 743 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 ABI1Q8IZP0 508 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 RNF169Q8NCN4 708 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 SLC7A3Q8WY07 619 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 MSLNLQ96KJ4 702 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 CEP170P1Q96L14 293 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 JPH2Q9BR39 696 aaPredicted RBP10.89□□□□□ -0.67
VPS41-201ENST00000265745 LRFN3Q9BTN0 628 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 INO80BQ9C086 356 aaPredicted RBP10.89□□□□□ -0.67
VPS41-201ENST00000265745 DHX33Q9H6R0 707 aaKnown RBP10.89□□□□□ -0.67
VPS41-201ENST00000265745 TLE6Q9H808 572 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 IFT122Q9HBG6 1241 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 BRMS1Q9HCU9 246 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 C11orf16Q9NQ32 467 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 TLR9Q9NR96 1032 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 RAPGEFL1Q9UHV5 662 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 CD207Q9UJ71 328 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 LZTS1Q9Y250 596 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 PPME1Q9Y570 386 aa10.89□□□□□ -0.67
VPS41-201ENST00000265745 COL4A4P53420 1690 aaPredicted RBP10.89□□□□□ -0.67
VPS41-201ENST00000265745 FSCN2O14926 492 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 ZBTB39O15060 712 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 JAK2O60674 1132 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 GPR37L1O60883 481 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 SLITRK3O94933 977 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 BAG4O95429 457 aaKnown RBP10.88□□□□□ -0.67
VPS41-201ENST00000265745 GLP2RO95838 553 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 SFPQP23246 707 aaKnown RBP eCLIP10.88□□□□□ -0.67
VPS41-201ENST00000265745 YWHABP31946 246 aaKnown RBP10.88□□□□□ -0.67
VPS41-201ENST00000265745 RFC5P40937 340 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 PHKA2P46019 1235 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 NDUFV1P49821 464 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 COASYQ13057 564 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 SMAD4Q13485 552 aaKnown RBP10.88□□□□□ -0.67
VPS41-201ENST00000265745 TMEM31Q5JXX7 168 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 PDE12Q6L8Q7 609 aaKnown RBP10.88□□□□□ -0.67
VPS41-201ENST00000265745 LRRC43Q8N309 656 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 PRPF31Q8WWY3 499 aaKnown RBP10.88□□□□□ -0.67
VPS41-201ENST00000265745 MRPS27Q92552 414 aaKnown RBP10.88□□□□□ -0.67
VPS41-201ENST00000265745 NLRP4Q96MN2 994 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 HSD17B14Q9BPX1 270 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 LXNQ9BS40 222 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 REPIN1Q9BWE0 567 aaKnown RBP10.88□□□□□ -0.67
VPS41-201ENST00000265745 ZSWIM4Q9H7M6 989 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 PUF60Q9UHX1 559 aaKnown RBP10.88□□□□□ -0.67
VPS41-201ENST00000265745 PCDHA12Q9UN75 941 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 SIP14410 1827 aa10.88□□□□□ -0.67
VPS41-201ENST00000265745 TCF20Q9UGU0 1960 aaKnown RBP10.87□□□□□ -0.67
VPS41-201ENST00000265745 PER2O15055 1255 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 ZNF623O75123 536 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 SKIP12755 728 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 ALADP13716 330 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 PPM1AP35813 382 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 PBX3P40426 434 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 POLGP54098 1239 aaPredicted RBP10.87□□□□□ -0.67
VPS41-201ENST00000265745 CYP4A11Q02928 519 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 KRT17Q04695 432 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 LAMTOR4Q0VGL1 99 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 ST3GAL1Q11201 340 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 CTTNQ14247 550 aaKnown RBP10.87□□□□□ -0.67
VPS41-201ENST00000265745 DUSP6Q16828 381 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 NCAPH2Q6IBW4 605 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 OTUD6AQ7L8S5 288 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 CATSPER4Q7RTX7 472 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 TPH2Q8IWU9 490 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 DIS3L2Q8IYB7 885 aaKnown RBP10.87□□□□□ -0.67
VPS41-201ENST00000265745 SMRP1Q8NCR6 262 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 HELQQ8TDG4 1101 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 PSPC1Q8WXF1 523 aaKnown RBP10.87□□□□□ -0.67
VPS41-201ENST00000265745 TMEM143Q96AN5 459 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 DYDC2Q96IM9 177 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 ZNF558Q96NG5 402 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 MTMR9Q96QG7 549 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 CDCA3Q99618 268 aaPredicted RBP10.87□□□□□ -0.67
VPS41-201ENST00000265745 NGRNQ9NPE2 291 aaKnown RBP10.87□□□□□ -0.67
VPS41-201ENST00000265745 SPG21Q9NZD8 308 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 PIN4Q9Y237 131 aaKnown RBP10.87□□□□□ -0.67
VPS41-201ENST00000265745 COL4A3BPQ9Y5P4 624 aa10.87□□□□□ -0.67
VPS41-201ENST00000265745 WNT7AO00755 349 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 ASAP2O43150 1006 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 LYPLA2O95372 231 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 SRGAP2CP0DJJ0 459 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 HOXA11P31270 313 aaPredicted RBP10.86□□□□□ -0.67
VPS41-201ENST00000265745 ALDH7A1P49419 539 aaKnown RBP10.86□□□□□ -0.67
VPS41-201ENST00000265745 RBM10P98175 930 aaKnown RBP10.86□□□□□ -0.67
VPS41-201ENST00000265745 KCNC3Q14003 757 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms