RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CEP95Q96GE4 821 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 EHD2Q9NZN4 543 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 ZHX2Q9Y6X8 837 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 PP2D1A8MPX8 630 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 FOXP2O15409 715 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 C21orf2O43822 256 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 SMARCA1P28370 1054 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 NFX1Q12986 1120 aaKnown RBP20.4■□□□□ 0.86
UPF1-201ENST00000262803 ATF5Q9Y2D1 282 aaPredicted RBP20.4■□□□□ 0.86
UPF1-201ENST00000262803 CPDO75976 1380 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 SPECC1L-ADORA2AF8WAN1 911 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 CRLF3Q8IUI8 442 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 CFAP36Q96G28 342 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 KLHL8Q9P2G9 620 aaPredicted RBP20.4■□□□□ 0.86
UPF1-201ENST00000262803 PFASO15067 1338 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 ASAP2O43150 1006 aa20.39■□□□□ 0.86
UPF1-201ENST00000262803 ZNF18P17022 549 aa20.39■□□□□ 0.86
UPF1-201ENST00000262803 SCP2P22307 547 aa20.39■□□□□ 0.86
UPF1-201ENST00000262803 SDC4P31431 198 aa20.39■□□□□ 0.86
UPF1-201ENST00000262803 TNS3Q68CZ2 1445 aa20.39■□□□□ 0.86
UPF1-201ENST00000262803 SCARA5Q6ZMJ2 495 aa20.39■□□□□ 0.86
UPF1-201ENST00000262803 CCDC138Q96M89 665 aa20.39■□□□□ 0.86
UPF1-201ENST00000262803 FSD1LQ9BXM9 530 aa20.39■□□□□ 0.86
UPF1-201ENST00000262803 IP6K2Q9UHH9 426 aa20.39■□□□□ 0.86
UPF1-201ENST00000262803 UBE4BO95155 1302 aa20.39■□□□□ 0.85
UPF1-201ENST00000262803 APOEP02649 317 aa20.39■□□□□ 0.85
UPF1-201ENST00000262803 ATP6V1E1P36543 226 aa20.39■□□□□ 0.85
UPF1-201ENST00000262803 YWHAHQ04917 246 aaPredicted RBP20.39■□□□□ 0.85
UPF1-201ENST00000262803 NAALADL2Q58DX5 795 aa20.39■□□□□ 0.85
UPF1-201ENST00000262803 MYCBPQ99417 103 aaPredicted RBP20.39■□□□□ 0.85
UPF1-201ENST00000262803 TMEM260Q9NX78 707 aa20.39■□□□□ 0.85
UPF1-201ENST00000262803 BARHL2Q9NY43 387 aa20.39■□□□□ 0.85
UPF1-201ENST00000262803 DCTN3O75935 186 aa20.39■□□□□ 0.85
UPF1-201ENST00000262803 GGPS1O95749 300 aa20.39■□□□□ 0.85
UPF1-201ENST00000262803 RASIP1Q5U651 963 aa20.39■□□□□ 0.85
UPF1-201ENST00000262803 RAB42Q8N4Z0 105 aa20.39■□□□□ 0.85
UPF1-201ENST00000262803 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.39■□□□□ 0.85
UPF1-201ENST00000262803 LMNAP02545 664 aaKnown RBP20.39■□□□□ 0.85
UPF1-201ENST00000262803 ARHGDIAP52565 204 aa20.39■□□□□ 0.85
UPF1-201ENST00000262803 BRINP3Q76B58 766 aa20.39■□□□□ 0.85
UPF1-201ENST00000262803 WDR75Q8IWA0 830 aaKnown RBP20.39■□□□□ 0.85
UPF1-201ENST00000262803 POTEB3A0JP26 581 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 POTECB2RU33 542 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 RALAP11233 206 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 POTEBQ6S5H4 581 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 THNSL1Q8IYQ7 743 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 NGRNQ9NPE2 291 aaKnown RBP20.38■□□□□ 0.85
UPF1-201ENST00000262803 PLS3P13797 630 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 NUGGCQ68CJ6 796 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 RBM46Q8TBY0 533 aaKnown RBP20.38■□□□□ 0.85
UPF1-201ENST00000262803 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.38■□□□□ 0.85
UPF1-201ENST00000262803 ZRANB2O95218 330 aaKnown RBP eCLIP20.38■□□□□ 0.85
UPF1-201ENST00000262803 EPC1Q9H2F5 836 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 FAF1Q9UNN5 650 aaPredicted RBP20.38■□□□□ 0.85
UPF1-201ENST00000262803 TRAPPC3O43617 180 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 ORC4O43929 436 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 ATP5HO75947 161 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 PYGLP06737 847 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 ATP2C1P98194 919 aaPredicted RBP20.38■□□□□ 0.85
UPF1-201ENST00000262803 GSPT2Q8IYD1 628 aaKnown RBP20.38■□□□□ 0.85
UPF1-201ENST00000262803 DCLK2Q8N568 766 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 KATNAL1Q9BW62 490 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 CNOT8Q9UFF9 292 aaKnown RBP20.38■□□□□ 0.85
UPF1-201ENST00000262803 NRKQ7Z2Y5 1582 aa20.38■□□□□ 0.85
UPF1-201ENST00000262803 FRMD3A2A2Y4 597 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 WDR91A4D1P6 747 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 MARK3P27448 753 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 GGCXP38435 758 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 RABL6Q3YEC7 729 aaPredicted RBP20.37■□□□□ 0.85
UPF1-201ENST00000262803 KCTD17Q8N5Z5 321 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 MTBPQ96DY7 904 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 OSBPL9Q96SU4 736 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 ANAPC7Q9UJX3 599 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 HSPA4LO95757 839 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 CYP19A1P11511 503 aaPredicted RBP20.37■□□□□ 0.85
UPF1-201ENST00000262803 IL1RL1Q01638 556 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 EFHC2Q5JST6 749 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 NFRKBQ6P4R8 1299 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 ATG9AQ7Z3C6 839 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 METTL16Q86W50 562 aaKnown RBP20.37■□□□□ 0.85
UPF1-201ENST00000262803 GUF1Q8N442 669 aaKnown RBP20.37■□□□□ 0.85
UPF1-201ENST00000262803 PPP1R2P1Q96PQ5 205 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 TRIM33Q9UPN9 1127 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 USP42Q9H9J4 1324 aaKnown RBP20.37■□□□□ 0.85
UPF1-201ENST00000262803 MAPK13O15264 365 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 SLC4A1P02730 911 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 TTC8Q8TAM2 541 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 GRID2IPA4D2P6 1211 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 H3BRJ5 948 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 PEX19P40855 299 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 GCLMP48507 274 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 LAMB3Q13751 1172 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 PCDHB8Q9UN66 801 aa20.37■□□□□ 0.85
UPF1-201ENST00000262803 ACAD11Q709F0 780 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 TRIM54Q9BYV2 358 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 POLD4Q9HCU8 107 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 HDAC6Q9UBN7 1215 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 CDC42BPAQ5VT25 1732 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 NBPF26B4DH59 902 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 SPARCL1Q14515 664 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms