RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	IBD2	P53892	351 aa		3.82	□□□□□ -1.8
UBC8	YEL012W	RPL15B	P54780	204 aa	Predicted RBP	3.82	□□□□□ -1.8
UBC8	YEL012W	LSM3	P57743	89 aa	Known RBP	3.82	□□□□□ -1.8
UBC8	YEL012W	NHP10	Q03435	203 aa		3.82	□□□□□ -1.8
UBC8	YEL012W	YDR239C	Q03780	787 aa		3.82	□□□□□ -1.8
UBC8	YEL012W	ARP10	Q04549	284 aa		3.82	□□□□□ -1.8
UBC8	YEL012W	YLR177W	Q06251	628 aa		3.82	□□□□□ -1.8
UBC8	YEL012W	APC9	Q12107	265 aa		3.82	□□□□□ -1.8
UBC8	YEL012W	YLR112W	Q12130	139 aa		3.82	□□□□□ -1.8
UBC8	YEL012W	ARG81	P05085	880 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	SPT3	P06844	337 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	DST1	P07273	309 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	RIM1	P32445	135 aa	Known RBP	3.81	□□□□□ -1.8
UBC8	YEL012W	SPC97	P38863	823 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	FLO5	P38894	1075 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	CIN4	P39110	191 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	YER034W	P40022	185 aa	Known RBP	3.81	□□□□□ -1.8
UBC8	YEL012W	XBP1	P40489	647 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	PSA1	P41940	361 aa	Known RBP	3.81	□□□□□ -1.8
UBC8	YEL012W	PTR3	P43606	678 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	RPE1	P46969	238 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	YJR141W	P47172	347 aa	Predicted RBP	3.81	□□□□□ -1.8
UBC8	YEL012W	SDT1	P53078	280 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	TWF1	P53250	332 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	KTR5	P53966	522 aa	Predicted RBP	3.81	□□□□□ -1.8
UBC8	YEL012W	MET31	Q03081	177 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	RRB1	Q04225	511 aa	Known RBP	3.81	□□□□□ -1.8
UBC8	YEL012W	VTI1	Q04338	217 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	SEI1	Q06058	285 aa		3.81	□□□□□ -1.8
UBC8	YEL012W	RUD3	Q12234	484 aa	Known RBP	3.81	□□□□□ -1.8
UBC8	YEL012W	PEP4	P07267	405 aa	Known RBP	3.8	□□□□□ -1.8
UBC8	YEL012W	RPL20A	P0CX23	172 aa	Known RBP	3.8	□□□□□ -1.8
UBC8	YEL012W	RPL20B	P0CX24	172 aa	Predicted RBP	3.8	□□□□□ -1.8
UBC8	YEL012W	GCD2	P12754	651 aa	Predicted RBP	3.8	□□□□□ -1.8
UBC8	YEL012W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	3.8	□□□□□ -1.8	not detected
UBC8	YEL012W	REC107	P21651	314 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	AIM17	P23180	465 aa	Known RBP	3.8	□□□□□ -1.8
UBC8	YEL012W	YCP4	P25349	247 aa	Known RBP	3.8	□□□□□ -1.8
UBC8	YEL012W	SPS22	P25380	463 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	ERG9	P29704	444 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	CMC1	P36064	111 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	BMT2	P38278	337 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	ICS2	P38284	255 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	FRT2	P39734	528 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	COA1	P40452	197 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	SEC28	P40509	296 aa	Known RBP	3.8	□□□□□ -1.8
UBC8	YEL012W	YJR154W	P47181	346 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	CDH1	P53197	566 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	EFM5	P53200	248 aa	Known RBP	3.8	□□□□□ -1.8
UBC8	YEL012W	MKC7	P53379	596 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	BIO4	P53630	237 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	NUP116	Q02630	1113 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	YPL107W	Q02873	248 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	CGI121	Q03705	181 aa	Known RBP	3.8	□□□□□ -1.8
UBC8	YEL012W	MIX14	Q04341	121 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	RBS1	Q05672	457 aa	Known RBP	3.8	□□□□□ -1.8
UBC8	YEL012W	POS5	Q06892	414 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	RGS2	Q99188	309 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	ISN1	Q99312	450 aa		3.8	□□□□□ -1.8
UBC8	YEL012W	FLO9	P39712	1322 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	PDX1	P16451	410 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	MDM10	P18409	493 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	RPS2	P25443	254 aa	Known RBP	3.79	□□□□□ -1.8
UBC8	YEL012W	YCR090C	P25654	182 aa	Known RBP	3.79	□□□□□ -1.8
UBC8	YEL012W	UBC6	P33296	250 aa	Predicted RBP	3.79	□□□□□ -1.8
UBC8	YEL012W	FES1	P38260	290 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	PHO89	P38361	574 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	ATG7	P38862	630 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	CCT2	P39076	527 aa	Known RBP	3.79	□□□□□ -1.8
UBC8	YEL012W	PEP8	P40335	379 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	INA22	P40576	216 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	RPS0B	P46654	252 aa	Known RBP	3.79	□□□□□ -1.8
UBC8	YEL012W	MDV1	P47025	714 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	EMC2	P47133	292 aa	Known RBP	3.79	□□□□□ -1.8
UBC8	YEL012W	ATP22	P50273	684 aa	Predicted RBP	3.79	□□□□□ -1.8
UBC8	YEL012W	TPC1	P53257	314 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	PDR16	P53860	351 aa	Known RBP	3.79	□□□□□ -1.8
UBC8	YEL012W	RPL22B	P56628	122 aa	Known RBP	3.79	□□□□□ -1.8
UBC8	YEL012W	SLT2	Q00772	484 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	GAS2	Q06135	555 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	YLR345W	Q06137	509 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	YOR365C	Q08844	703 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	YDL007C-A	Q2V2Q0	85 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	Q0144	Q9ZZW2	109 aa		3.79	□□□□□ -1.8
UBC8	YEL012W	HEM2	P05373	342 aa		3.78	□□□□□ -1.8
UBC8	YEL012W	YFR010W-A	P0C5N0	62 aa		3.78	□□□□□ -1.8
UBC8	YEL012W	CTA1	P15202	515 aa		3.78	□□□□□ -1.8
UBC8	YEL012W	SRV2	P17555	526 aa	Known RBP	3.78	□□□□□ -1.8
UBC8	YEL012W	RPB8	P20436	146 aa		3.78	□□□□□ -1.8
UBC8	YEL012W	ATS1	P31386	333 aa		3.78	□□□□□ -1.8
UBC8	YEL012W	PHA2	P32452	334 aa		3.78	□□□□□ -1.8
UBC8	YEL012W	HSP150	P32478	413 aa		3.78	□□□□□ -1.8
UBC8	YEL012W	TUL1	P36096	758 aa		3.78	□□□□□ -1.8
UBC8	YEL012W	CCT4	P39078	528 aa	Known RBP	3.78	□□□□□ -1.8
UBC8	YEL012W	MEP2	P41948	499 aa		3.78	□□□□□ -1.8
UBC8	YEL012W	ALB1	P47019	175 aa	Predicted RBP	3.78	□□□□□ -1.8
UBC8	YEL012W	YNL140C	P53910	189 aa		3.78	□□□□□ -1.8
UBC8	YEL012W	IZH1	Q03419	316 aa		3.78	□□□□□ -1.8
UBC8	YEL012W	EKI1	Q03764	534 aa		3.78	□□□□□ -1.8
UBC8	YEL012W	GSH2	Q08220	491 aa		3.78	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 195.8 ms