RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 IGKV6-21A0A0C4DH24 114 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 TBX10O75333 385 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 BAG4O95429 457 aaKnown RBP11.52□□□□□ -0.57
SCN1A-222ENST00000642141 P4HBP07237 508 aaKnown RBP11.52□□□□□ -0.57
SCN1A-222ENST00000642141 COL9A1P20849 921 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 TXKP42681 527 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 NDUFV1P49821 464 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 POLGP54098 1239 aaPredicted RBP11.52□□□□□ -0.57
SCN1A-222ENST00000642141 ERVFC1P60507 584 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 EPHA7Q15375 998 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 CALCRLQ16602 461 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 CTC1Q2NKJ3 1217 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 XKR9Q5GH70 373 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 TWF2Q6IBS0 349 aaKnown RBP11.52□□□□□ -0.57
SCN1A-222ENST00000642141 FAM178BQ8IXR5 827 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 GJD3Q8N144 294 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 TMEM117Q9H0C3 514 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 ELAC1Q9H777 363 aaKnown RBP11.52□□□□□ -0.57
SCN1A-222ENST00000642141 AAASQ9NRG9 546 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 RNF216Q9NWF9 866 aaPredicted RBP11.52□□□□□ -0.57
SCN1A-222ENST00000642141 PCDHA12Q9UN75 941 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 LIMCH1Q9UPQ0 1083 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 PIN4Q9Y237 131 aaKnown RBP11.52□□□□□ -0.57
SCN1A-222ENST00000642141 RALGAPA2Q2PPJ7 1873 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 BRWD1Q9NSI6 2320 aa11.52□□□□□ -0.57
SCN1A-222ENST00000642141 WDR81Q562E7 1941 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 A0A0U1RQF3 1178 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 MEIS3P2A8K0S8 358 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 NT5C1B-RDH14C9J2C7 533 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 TBX3O15119 743 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 NEMFO60524 1076 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 SLITRK3O94933 977 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 ATF7P17544 494 aaPredicted RBP11.51□□□□□ -0.57
SCN1A-222ENST00000642141 YWHABP31946 246 aaKnown RBP11.51□□□□□ -0.57
SCN1A-222ENST00000642141 MCM7P33993 719 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 SPIRE1Q08AE8 756 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 LAMTOR4Q0VGL1 99 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 ADAM15Q13444 863 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 COL19A1Q14993 1142 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 NAALADL2Q58DX5 795 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 PLPP4Q5VZY2 271 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 CATSPER4Q7RTX7 472 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 SLFN12Q8IYM2 578 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 SLC7A3Q8WY07 619 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 NAP1L4Q99733 375 aaKnown RBP11.51□□□□□ -0.57
SCN1A-222ENST00000642141 EIF2AK1Q9BQI3 630 aaKnown RBP11.51□□□□□ -0.57
SCN1A-222ENST00000642141 TTC12Q9H892 705 aaPredicted RBP11.51□□□□□ -0.57
SCN1A-222ENST00000642141 MINDY3Q9H8M7 445 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 BARX2Q9UMQ3 279 aaPredicted RBP11.51□□□□□ -0.57
SCN1A-222ENST00000642141 INPP5FQ9Y2H2 1132 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 COL4A3BPQ9Y5P4 624 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 KIAA1671Q9BY89 1806 aa11.51□□□□□ -0.57
SCN1A-222ENST00000642141 NCK2O43639 380 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 LAG3P18627 525 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 SFPQP23246 707 aaKnown RBP eCLIP11.5□□□□□ -0.57
SCN1A-222ENST00000642141 CA8P35219 290 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 PHKA2P46019 1235 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 EMC2Q15006 297 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 LLGL2Q6P1M3 1020 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 KCNT2Q6UVM3 1135 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 MAEAQ7L5Y9 396 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 OTUD6AQ7L8S5 288 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 ZNF598Q86UK7 904 aaKnown RBP11.5□□□□□ -0.57
SCN1A-222ENST00000642141 ZNF710Q8N1W2 664 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 PIGOQ8TEQ8 1089 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 ZNF558Q96NG5 402 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 APOL5Q9BWW9 433 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 GBP3Q9H0R5 595 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 TMEM60Q9H2L4 133 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 ZSWIM4Q9H7M6 989 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 IFT122Q9HBG6 1241 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 TLR9Q9NR96 1032 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 DACT1Q9NYF0 836 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 CLEC1BQ9P126 229 aa11.5□□□□□ -0.57
SCN1A-222ENST00000642141 ATG2AQ2TAZ0 1938 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 POTEMA6NI47 508 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 HOXA2O43364 376 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 DKC1O60832 514 aaKnown RBP eCLIP11.49□□□□□ -0.573e-16■■■■■ 73
SCN1A-222ENST00000642141 CDC42EP1Q00587 391 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 SAFBQ15424 915 aaKnown RBP eCLIP11.49□□□□□ -0.57
SCN1A-222ENST00000642141 ZNF174Q15697 407 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 PUS10Q3MIT2 529 aaKnown RBP11.49□□□□□ -0.57
SCN1A-222ENST00000642141 ZNF410Q86VK4 478 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 C4orf19Q8IY42 314 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 LRRC43Q8N309 656 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 RNF149Q8NC42 400 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 VN1R2Q8NFZ6 395 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 PSPC1Q8WXF1 523 aaKnown RBP11.49□□□□□ -0.57
SCN1A-222ENST00000642141 PPP2R3CQ969Q6 453 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 C8orf76Q96K31 380 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 KIF2CQ99661 725 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 TCF25Q9BQ70 676 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 JPH2Q9BR39 696 aaPredicted RBP11.49□□□□□ -0.57
SCN1A-222ENST00000642141 DHX33Q9H6R0 707 aaKnown RBP11.49□□□□□ -0.57
SCN1A-222ENST00000642141 ENTPD7Q9NQZ7 604 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 SPG21Q9NZD8 308 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 CD207Q9UJ71 328 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 FNDC1Q4ZHG4 1894 aaPredicted RBP11.49□□□□□ -0.57
SCN1A-222ENST00000642141 PLXNA4Q9HCM2 1894 aa11.49□□□□□ -0.57
SCN1A-222ENST00000642141 HIDE1A8MVS5 230 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms