RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 DGKHQ86XP1 1220 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 LILRB2Q8N423 598 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SLAIN1Q8ND83 568 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 URGCPQ8TCY9 931 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 TBC1D5Q92609 795 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 TNFRSF25Q93038 417 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 C14orf166Q9Y224 244 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 MINDY4BA8MYZ0 360 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 H3BQV1 296 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 HSD17B2P37059 387 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 KCNJ5P48544 419 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 MASP1P48740 699 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 LIMK1P53667 647 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 NNTQ13423 1086 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CACNA2D4Q7Z3S7 1137 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 HEATR3Q7Z4Q2 680 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 GSPT2Q8IYD1 628 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SYTL1Q8IYJ3 562 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 BEST2Q8NFU1 509 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SLC9A6Q92581 669 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 OSBPL3Q9H4L5 887 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ELAC1Q9H777 363 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 PRR14LQ5THK1 2151 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 PLEKHG2Q9H7P9 1386 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 GMFGO60234 142 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 RPL17P18621 184 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 FUT11Q495W5 492 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PI16Q6UXB8 463 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 R3HCC1LQ7Z5L2 792 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 ANKS4BQ8N8V4 417 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CHAC2Q8WUX2 184 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CUL5Q93034 780 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 EMID1Q96A84 441 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 COG8Q96MW5 612 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CDK5RAP1Q96SZ6 601 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 SENP6Q9GZR1 1112 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 KLHL25Q9H0H3 589 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 RHBGQ9H310 441 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 NTN4Q9HB63 628 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 GMIPQ9P107 970 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 SCOCQ9UIL1 159 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 NOVA2Q9UNW9 492 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 E9PMD0 336 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 ZBTB39O15060 712 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 AK2P54819 239 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 GSCP56915 257 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 DSG2Q14126 1118 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 AKAP14Q86UN6 197 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 MLPHQ9BV36 600 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 NAT10Q9H0A0 1025 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC177Q9NQR7 707 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 KCND1Q9NSA2 647 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TBC1D22BQ9NU19 505 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 SETD4Q9NVD3 440 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 ADD3Q9UEY8 706 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 GFPT1Q06210 699 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 DHX9Q08211 1270 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 RASGRF1Q13972 1273 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 ARMC4Q5T2S8 1044 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 MARCH10Q8NA82 808 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 IPMKQ8NFU5 416 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 RNASE11Q8TAA1 199 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC74BQ96LY2 380 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TMEM237Q96Q45 408 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 GAS2L1Q99501 681 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 LLPHQ9BRT6 129 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 SAMM50Q9Y512 469 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PHLDB1Q86UU1 1377 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PIK3R4Q99570 1358 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 ATP8B3O60423 1300 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TSPAN4O14817 238 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 STRNO43815 780 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 KRT19P08727 400 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PON1P27169 355 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TKTP29401 623 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PCP4P48539 62 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CPT1AP50416 773 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 GRSF1Q12849 480 aaKnown RBP eCLIP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 IRGQQ8WZA9 623 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 RBM18Q96H35 190 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 FAM126AQ9BYI3 521 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 MYH8P13535 1937 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TRPM6Q9BX84 2022 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 WNK1Q9H4A3 2382 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PEX1O43933 1283 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TRIM60Q495X7 471 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PRR16Q569H4 304 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TTC22Q5TAA0 569 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 DAB2IPQ5VWQ8 1189 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TRIM72Q6ZMU5 477 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PDZD4Q76G19 769 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PATL1Q86TB9 770 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 LRRC71Q8N4P6 559 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CMTM3Q96MX0 182 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 COPS4Q9BT78 406 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 EIF3AQ14152 1382 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 SOWAHDA6NJG2 315 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 NPIPA7E9PJI5 369 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms