RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 ZNF579Q8NAF0 562 aaKnown RBP16.54■□□□□ 0.24
LINC00643-205ENST00000623219 TCP11Q8WWU5 503 aa16.54■□□□□ 0.24
LINC00643-205ENST00000623219 MTRQ99707 1265 aa16.54■□□□□ 0.24
LINC00643-205ENST00000623219 HSD17B14Q9BPX1 270 aa16.54■□□□□ 0.24
LINC00643-205ENST00000623219 NSUN3Q9H649 340 aaKnown RBP16.54■□□□□ 0.24
LINC00643-205ENST00000623219 NOL7Q9UMY1 257 aaKnown RBP16.54■□□□□ 0.24
LINC00643-205ENST00000623219 TRIP11Q15643 1979 aa16.53■□□□□ 0.24
LINC00643-205ENST00000623219 TBKBP1A7MCY6 615 aa16.53■□□□□ 0.24
LINC00643-205ENST00000623219 FGFR1P11362 822 aa16.53■□□□□ 0.24
LINC00643-205ENST00000623219 FGFR4P22455 802 aa16.53■□□□□ 0.24
LINC00643-205ENST00000623219 U2AF2P26368 475 aaKnown RBP eCLIP16.53■□□□□ 0.24
LINC00643-205ENST00000623219 FAM102BQ5T8I3 360 aa16.53■□□□□ 0.24
LINC00643-205ENST00000623219 ECHDC2Q86YB7 292 aa16.53■□□□□ 0.24
LINC00643-205ENST00000623219 TMX3Q96JJ7 454 aa16.53■□□□□ 0.24
LINC00643-205ENST00000623219 CCDC43Q96MW1 224 aaKnown RBP16.53■□□□□ 0.24
LINC00643-205ENST00000623219 CHST12Q9NRB3 414 aa16.53■□□□□ 0.24
LINC00643-205ENST00000623219 BMP2KQ9NSY1 1161 aaPredicted RBP16.53■□□□□ 0.24
LINC00643-205ENST00000623219 ANKEF1Q9NU02 776 aa16.53■□□□□ 0.24
LINC00643-205ENST00000623219 A0A0U1RQF3 1178 aa16.52■□□□□ 0.24
LINC00643-205ENST00000623219 GRM6O15303 877 aa16.52■□□□□ 0.24
LINC00643-205ENST00000623219 CSDE1O75534 798 aaKnown RBP16.52■□□□□ 0.24
LINC00643-205ENST00000623219 CD2BP2O95400 341 aaKnown RBP16.52■□□□□ 0.24
LINC00643-205ENST00000623219 KSR1Q8IVT5 923 aa16.52■□□□□ 0.24
LINC00643-205ENST00000623219 TMEM143Q96AN5 459 aa16.52■□□□□ 0.24
LINC00643-205ENST00000623219 TRAIPQ9BWF2 469 aa16.52■□□□□ 0.24
LINC00643-205ENST00000623219 TMEM117Q9H0C3 514 aa16.52■□□□□ 0.24
LINC00643-205ENST00000623219 IFT122Q9HBG6 1241 aa16.52■□□□□ 0.24
LINC00643-205ENST00000623219 TUFT1Q9NNX1 390 aa16.52■□□□□ 0.24
LINC00643-205ENST00000623219 AAASQ9NRG9 546 aa16.52■□□□□ 0.24
LINC00643-205ENST00000623219 PIN4Q9Y237 131 aaKnown RBP16.52■□□□□ 0.24
LINC00643-205ENST00000623219 PDCD11Q14690 1871 aaKnown RBP16.51■□□□□ 0.23
LINC00643-205ENST00000623219 ZBTB39O15060 712 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 ASAP2O43150 1006 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 DGAT1O75907 488 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 EOMESO95936 686 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 SKIP12755 728 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 RARRES1P49788 294 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 KCNQ1P51787 676 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 LAMTOR4Q0VGL1 99 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 ZNF174Q15697 407 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 CSPP1Q1MSJ5 1256 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 TCEAL5Q5H9L2 206 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 SPOUT1Q5T280 376 aaKnown RBP16.51■□□□□ 0.23
LINC00643-205ENST00000623219 CATSPER4Q7RTX7 472 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 SRGAP1Q7Z6B7 1085 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 FERMT3Q86UX7 667 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 ABI1Q8IZP0 508 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 LRRC43Q8N309 656 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 ERMNQ8TAM6 284 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 ADAMTS19Q8TE59 1207 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 PRPF31Q8WWY3 499 aaKnown RBP16.51■□□□□ 0.23
LINC00643-205ENST00000623219 RSPH1Q8WYR4 309 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 UBE2ZQ9H832 354 aaPredicted RBP16.51■□□□□ 0.23
LINC00643-205ENST00000623219 XPNPEP1Q9NQW7 623 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 AGPAT5Q9NUQ2 364 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 RNF19AQ9NV58 838 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 PLAGL2Q9UPG8 496 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 PCDHB12Q9Y5F1 795 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 CITO14578 2027 aa16.51■□□□□ 0.23
LINC00643-205ENST00000623219 ITGB1P05556 798 aa16.5■□□□□ 0.23
LINC00643-205ENST00000623219 ATF7P17544 494 aaPredicted RBP16.5■□□□□ 0.23
LINC00643-205ENST00000623219 LAG3P18627 525 aa16.5■□□□□ 0.23
LINC00643-205ENST00000623219 TECP42680 631 aa16.5■□□□□ 0.23
LINC00643-205ENST00000623219 RAB27AP51159 221 aa16.5■□□□□ 0.23
LINC00643-205ENST00000623219 MXD4Q14582 209 aaPredicted RBP16.5■□□□□ 0.23
LINC00643-205ENST00000623219 COL19A1Q14993 1142 aa16.5■□□□□ 0.23
LINC00643-205ENST00000623219 HAUS3Q68CZ6 603 aa16.5■□□□□ 0.23
LINC00643-205ENST00000623219 TWF2Q6IBS0 349 aaKnown RBP16.5■□□□□ 0.23
LINC00643-205ENST00000623219 ZNF598Q86UK7 904 aaKnown RBP16.5■□□□□ 0.23
LINC00643-205ENST00000623219 KLHL23Q8NBE8 558 aa16.5■□□□□ 0.23
LINC00643-205ENST00000623219 CASD1Q96PB1 797 aa16.5■□□□□ 0.23
LINC00643-205ENST00000623219 POLR3CQ9BUI4 534 aaPredicted RBP16.5■□□□□ 0.23
LINC00643-205ENST00000623219 CWH43Q9H720 699 aa16.5■□□□□ 0.23
LINC00643-205ENST00000623219 ALG13Q9NP73 1137 aaKnown RBP16.5■□□□□ 0.23
LINC00643-205ENST00000623219 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.49■□□□□ 0.23
LINC00643-205ENST00000623219 MED24O75448 989 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 SPATA31C1P0DKV0 1188 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 XRCC6P12956 609 aaKnown RBP eCLIP16.49■□□□□ 0.23
LINC00643-205ENST00000623219 BMP1P13497 986 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 RPA1P27694 616 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 GJB2P29033 226 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 PHKA2P46019 1235 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 FXR2P51116 673 aaKnown RBP eCLIP16.49■□□□□ 0.23
LINC00643-205ENST00000623219 NBR1Q14596 966 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 PCBP1Q15365 356 aaKnown RBP eCLIP16.49■□□□□ 0.23
LINC00643-205ENST00000623219 CATSPER3Q86XQ3 398 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 COLGALT1Q8NBJ5 622 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 RNF149Q8NC42 400 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 RNF169Q8NCN4 708 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 SPPL3Q8TCT6 385 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 PIGOQ8TEQ8 1089 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 PABPC5Q96DU9 382 aaKnown RBP16.49■□□□□ 0.23
LINC00643-205ENST00000623219 UHRF1Q96T88 793 aaPredicted RBP16.49■□□□□ 0.23
LINC00643-205ENST00000623219 MRPL9Q9BYD2 267 aaKnown RBP16.49■□□□□ 0.23
LINC00643-205ENST00000623219 TYW1Q9NV66 732 aaKnown RBP16.49■□□□□ 0.23
LINC00643-205ENST00000623219 HCSTQ9UBK5 93 aa16.49■□□□□ 0.23
LINC00643-205ENST00000623219 DBR1Q9UK59 544 aaKnown RBP16.49■□□□□ 0.23
LINC00643-205ENST00000623219 LAD1O00515 517 aa16.48■□□□□ 0.23
LINC00643-205ENST00000623219 NCK2O43639 380 aa16.48■□□□□ 0.23
LINC00643-205ENST00000623219 SRGAP2CP0DJJ0 459 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms