RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 HOXA2O43364 376 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 NCK2O43639 380 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 LYPLA2O95372 231 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 SRGAP2CP0DJJ0 459 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 SFPQP23246 707 aaKnown RBP eCLIP16.84■□□□□ 0.29
LIG1-215ENST00000597901 MCM7P33993 719 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 HYAL1Q12794 435 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 COL19A1Q14993 1142 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 ZNF174Q15697 407 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 EP400NLQ6ZTU2 488 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 ZNF598Q86UK7 904 aaKnown RBP16.84■□□□□ 0.29
LIG1-215ENST00000597901 FAM184AQ8NB25 1140 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 RNF169Q8NCN4 708 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 NEK9Q8TD19 979 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 NLRP4Q96MN2 994 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 ANKEF1Q9NU02 776 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 HCSTQ9UBK5 93 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 COL4A3BPQ9Y5P4 624 aa16.84■□□□□ 0.29
LIG1-215ENST00000597901 A0A087WWV3 80 aa16.83■□□□□ 0.28
LIG1-215ENST00000597901 CSPG5O95196 566 aa16.83■□□□□ 0.28
LIG1-215ENST00000597901 XRCC6P12956 609 aaKnown RBP eCLIP16.83■□□□□ 0.28
LIG1-215ENST00000597901 LAMTOR4Q0VGL1 99 aa16.83■□□□□ 0.28
LIG1-215ENST00000597901 RABEP1Q15276 862 aa16.83■□□□□ 0.28
LIG1-215ENST00000597901 CATSPER4Q7RTX7 472 aa16.83■□□□□ 0.28
LIG1-215ENST00000597901 TCP11Q8WWU5 503 aa16.83■□□□□ 0.28
LIG1-215ENST00000597901 PSPC1Q8WXF1 523 aaKnown RBP16.83■□□□□ 0.28
LIG1-215ENST00000597901 TRAIPQ9BWF2 469 aa16.83■□□□□ 0.28
LIG1-215ENST00000597901 IGFLR1Q9H665 355 aa16.83■□□□□ 0.28
LIG1-215ENST00000597901 BMP2KQ9NSY1 1161 aaPredicted RBP16.83■□□□□ 0.28
LIG1-215ENST00000597901 CLDND1Q9NY35 253 aa16.83■□□□□ 0.28
LIG1-215ENST00000597901 VCANP13611 3396 aa16.82■□□□□ 0.28
LIG1-215ENST00000597901 H3BQ06 376 aaPredicted RBP16.82■□□□□ 0.28
LIG1-215ENST00000597901 IRS1P35568 1242 aa16.82■□□□□ 0.28
LIG1-215ENST00000597901 LTBRP36941 435 aa16.82■□□□□ 0.28
LIG1-215ENST00000597901 PHKA2P46019 1235 aa16.82■□□□□ 0.28
LIG1-215ENST00000597901 EMC2Q15006 297 aa16.82■□□□□ 0.28
LIG1-215ENST00000597901 CTC1Q2NKJ3 1217 aa16.82■□□□□ 0.28
LIG1-215ENST00000597901 CLLU1OSQ5K130 101 aa16.82■□□□□ 0.28
LIG1-215ENST00000597901 SRGAP1Q7Z6B7 1085 aa16.82■□□□□ 0.28
LIG1-215ENST00000597901 FERMT3Q86UX7 667 aa16.82■□□□□ 0.28
LIG1-215ENST00000597901 ABI1Q8IZP0 508 aa16.82■□□□□ 0.28
LIG1-215ENST00000597901 COLGALT1Q8NBJ5 622 aa16.82■□□□□ 0.28
LIG1-215ENST00000597901 MICAL1Q8TDZ2 1067 aa16.82■□□□□ 0.28
LIG1-215ENST00000597901 COL4A4P53420 1690 aaPredicted RBP16.81■□□□□ 0.28
LIG1-215ENST00000597901 GRXCR2A6NFK2 248 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 GAS2O43903 313 aaKnown RBP16.81■□□□□ 0.28
LIG1-215ENST00000597901 FGF18O76093 207 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 SPATA31C1P0DKV0 1188 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 ATF7P17544 494 aaPredicted RBP16.81■□□□□ 0.28
LIG1-215ENST00000597901 LAG3P18627 525 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 GTF2F1P35269 517 aaKnown RBP eCLIP16.81■□□□□ 0.28
LIG1-215ENST00000597901 TECP42680 631 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 UBE3AQ05086 875 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 ADAM15Q13444 863 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 CSPP1Q1MSJ5 1256 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 PUS10Q3MIT2 529 aaKnown RBP16.81■□□□□ 0.28
LIG1-215ENST00000597901 TWF2Q6IBS0 349 aaKnown RBP16.81■□□□□ 0.28
LIG1-215ENST00000597901 PTCRAQ6ISU1 281 aaPredicted RBP16.81■□□□□ 0.28
LIG1-215ENST00000597901 THNSL1Q8IYQ7 743 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 HELQQ8TDG4 1101 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 PIGOQ8TEQ8 1089 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 MTRQ99707 1265 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 C1QTNF1Q9BXJ1 281 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 MINDY3Q9H8M7 445 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 XPNPEP1Q9NQW7 623 aa16.81■□□□□ 0.28
LIG1-215ENST00000597901 PIN4Q9Y237 131 aaKnown RBP16.81■□□□□ 0.28
LIG1-215ENST00000597901 POTEMA6NI47 508 aa16.8■□□□□ 0.28
LIG1-215ENST00000597901 ZNF623O75123 536 aa16.8■□□□□ 0.28
LIG1-215ENST00000597901 SKIP12755 728 aa16.8■□□□□ 0.28
LIG1-215ENST00000597901 ERVFC1P60507 584 aa16.8■□□□□ 0.28
LIG1-215ENST00000597901 ORC2Q13416 577 aaPredicted RBP16.8■□□□□ 0.28
LIG1-215ENST00000597901 GNL2Q13823 731 aaKnown RBP16.8■□□□□ 0.28
LIG1-215ENST00000597901 KCNT2Q6UVM3 1135 aa16.8■□□□□ 0.28
LIG1-215ENST00000597901 CATSPER3Q86XQ3 398 aa16.8■□□□□ 0.28
LIG1-215ENST00000597901 NOSTRINQ8IVI9 506 aa16.8■□□□□ 0.28
LIG1-215ENST00000597901 RNF149Q8NC42 400 aa16.8■□□□□ 0.28
LIG1-215ENST00000597901 SPTBN5Q9NRC6 3674 aaKnown RBP16.8■□□□□ 0.28
LIG1-215ENST00000597901 LOXHD1Q8IVV2 1947 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 LINC01565O15544 149 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 ST18O60284 1047 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 DGAT1O75907 488 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 IL9P15248 144 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 U2AF2P26368 475 aaKnown RBP eCLIP16.79■□□□□ 0.28
LIG1-215ENST00000597901 HOXA11P31270 313 aaPredicted RBP16.79■□□□□ 0.28
LIG1-215ENST00000597901 ARL2P36404 184 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 TRAPPC10P48553 1259 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 RARRES1P49788 294 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 PLCB3Q01970 1234 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 DLX2Q07687 328 aaPredicted RBP16.79■□□□□ 0.28
LIG1-215ENST00000597901 MXD4Q14582 209 aaPredicted RBP16.79■□□□□ 0.28
LIG1-215ENST00000597901 LONRF3Q496Y0 759 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 TTC38Q5R3I4 469 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 ADGRD2Q7Z7M1 963 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 RBM23Q86U06 439 aaKnown RBP16.79■□□□□ 0.28
LIG1-215ENST00000597901 LRRC43Q8N309 656 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 C4orf32Q8N8J7 132 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 LPPQ93052 612 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 PPP2R3CQ969Q6 453 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 UPF2Q9HAU5 1272 aaKnown RBP16.79■□□□□ 0.28
LIG1-215ENST00000597901 TUFT1Q9NNX1 390 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms