RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 FAM102BQ5T8I3 360 aa16.68■□□□□ 0.26
UPF1-202ENST00000594243 PPP2R2DQ66LE6 453 aa16.68■□□□□ 0.26
UPF1-202ENST00000594243 Q7L0L9 218 aa16.68■□□□□ 0.26
UPF1-202ENST00000594243 MAEAQ7L5Y9 396 aa16.68■□□□□ 0.26
UPF1-202ENST00000594243 POLR3FQ9H1D9 316 aaPredicted RBP16.68■□□□□ 0.26
UPF1-202ENST00000594243 TTYH1Q9H313 450 aaPredicted RBP16.68■□□□□ 0.26
UPF1-202ENST00000594243 TFIP11Q9UBB9 837 aaKnown RBP16.68■□□□□ 0.26
UPF1-202ENST00000594243 FBXO2Q9UK22 296 aaPredicted RBP16.68■□□□□ 0.26
UPF1-202ENST00000594243 MGEA5O60502 916 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 CSDE1O75534 798 aaKnown RBP16.67■□□□□ 0.26
UPF1-202ENST00000594243 SARSP49591 514 aaKnown RBP16.67■□□□□ 0.26
UPF1-202ENST00000594243 GRIN1Q05586 938 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 GRB10Q13322 594 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 DSC3Q14574 896 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 CATSPER4Q7RTX7 472 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 NPAS4Q8IUM7 802 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 LINC00301Q8NCQ3 95 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 RASSF8Q8NHQ8 419 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 LINC01599Q8WXQ3 324 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 FAM161BQ96MY7 647 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 PNMA5Q96PV4 448 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 YME1L1Q96TA2 773 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 NFKBIZQ9BYH8 718 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 CCSER1Q9C0I3 900 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 CSRNP2Q9H175 543 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 MTMR10Q9NXD2 777 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 DACT1Q9NYF0 836 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 CFAP45Q9UL16 551 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 LRFN2Q9ULH4 789 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 PCDHB7Q9Y5E2 793 aa16.67■□□□□ 0.26
UPF1-202ENST00000594243 ARID2Q68CP9 1835 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 PPP6R2O75170 966 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 YEATS4O95619 227 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 FGFR4P22455 802 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 GLRA2P23416 452 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 TXLNAP40222 546 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 PTENP60484 403 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 FAM189BP81408 668 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 NCBP1Q09161 790 aaKnown RBP16.66■□□□□ 0.26
UPF1-202ENST00000594243 PKP1Q13835 747 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 MICAL3Q7RTP6 2002 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 SYT2Q8N9I0 419 aaPredicted RBP16.66■□□□□ 0.26
UPF1-202ENST00000594243 KRI1Q8N9T8 703 aaKnown RBP16.66■□□□□ 0.26
UPF1-202ENST00000594243 KIFAP3Q92845 792 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 PLIN2Q99541 437 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 ELAC1Q9H777 363 aaKnown RBP16.66■□□□□ 0.26
UPF1-202ENST00000594243 GPRC5CQ9NQ84 441 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 CCDC39Q9UFE4 941 aa16.66■□□□□ 0.26
UPF1-202ENST00000594243 C9IYK1 514 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 SPTLC2O15270 562 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 DGKIO75912 1065 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 BRD1O95696 1058 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 CAPSQ13938 189 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 PPP2R5AQ15172 486 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 TMEM119Q4V9L6 283 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 RINT1Q6NUQ1 792 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 KCNK18Q7Z418 384 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 IFNLR1Q8IU57 520 aaPredicted RBP16.65■□□□□ 0.26
UPF1-202ENST00000594243 CRIPAKQ8N1N5 446 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 ASAP3Q8TDY4 903 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 IFT74Q96LB3 600 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 CLIC6Q96NY7 704 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 TIPINQ9BVW5 301 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 KCND2Q9NZV8 630 aa16.65■□□□□ 0.26
UPF1-202ENST00000594243 DAXXQ9UER7 740 aaPredicted RBP16.65■□□□□ 0.26
UPF1-202ENST00000594243 LOXHD1Q8IVV2 1947 aa16.64■□□□□ 0.26
UPF1-202ENST00000594243 LCHNA4D1U4 455 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 LRRIQ4A6NIV6 560 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 INO80B-WBP1J3KQ70 363 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 ERLIN2O94905 339 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 SSBP05455 408 aaKnown RBP eCLIP16.64■□□□□ 0.25
UPF1-202ENST00000594243 PLA2G4BP0C869 781 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 SKIP12755 728 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 AXLP30530 894 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 TAP1Q03518 808 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 GRIN2CQ14957 1233 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 FOXD4L6Q3SYB3 417 aaPredicted RBP16.64■□□□□ 0.25
UPF1-202ENST00000594243 SPECC1Q5M775 1068 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 FOXD4L3Q6VB84 417 aaPredicted RBP16.64■□□□□ 0.25
UPF1-202ENST00000594243 C1orf186Q6ZWK4 172 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 ZBTB8OSQ8IWT0 167 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 SP7Q8TDD2 431 aaPredicted RBP16.64■□□□□ 0.25
UPF1-202ENST00000594243 ZNF689Q96CS4 500 aaPredicted RBP16.64■□□□□ 0.25
UPF1-202ENST00000594243 EPSTI1Q96J88 318 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 DRC1Q96MC2 740 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 TRAIPQ9BWF2 469 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 MINDY3Q9H8M7 445 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 TMEM161AQ9NX61 479 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 KCNG1Q9UIX4 513 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 PIN4Q9Y237 131 aaKnown RBP16.64■□□□□ 0.25
UPF1-202ENST00000594243 ATP6V1DQ9Y5K8 247 aa16.64■□□□□ 0.25
UPF1-202ENST00000594243 PTPRSQ13332 1948 aa16.63■□□□□ 0.25
UPF1-202ENST00000594243 A0A0U1RQF3 1178 aa16.63■□□□□ 0.25
UPF1-202ENST00000594243 LINC01553A4QN01 128 aa16.63■□□□□ 0.25
UPF1-202ENST00000594243 EOMESO95936 686 aa16.63■□□□□ 0.25
UPF1-202ENST00000594243 DDIT3P35638 169 aa16.63■□□□□ 0.25
UPF1-202ENST00000594243 NAMPTP43490 491 aa16.63■□□□□ 0.25
UPF1-202ENST00000594243 SLC12A3P55017 1021 aa16.63■□□□□ 0.25
UPF1-202ENST00000594243 KARSQ15046 597 aaKnown RBP16.63■□□□□ 0.25
UPF1-202ENST00000594243 TWF2Q6IBS0 349 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms