RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 FLT3P36888 993 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 CERKLQ49MI3 558 aaPredicted RBP11.77□□□□□ -0.53
VPS4B-206ENST00000591475 SPDYCQ5MJ68 293 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 ANGEL2Q5VTE6 544 aaKnown RBP11.77□□□□□ -0.53
VPS4B-206ENST00000591475 TCERG1LQ5VWI1 586 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 MOXD1Q6UVY6 613 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 ARMC9Q7Z3E5 817 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 DNAAF5Q86Y56 855 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 SYT2Q8N9I0 419 aaPredicted RBP11.77□□□□□ -0.53
VPS4B-206ENST00000591475 U2AF1L4Q8WU68 220 aaKnown RBP11.77□□□□□ -0.53
VPS4B-206ENST00000591475 HES6Q96HZ4 224 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 REEP2Q9BRK0 252 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 DEFB129Q9H1M3 183 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.77□□□□□ -0.53
VPS4B-206ENST00000591475 GCNT4Q9P109 453 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 TTC7AQ9ULT0 858 aaPredicted RBP11.77□□□□□ -0.53
VPS4B-206ENST00000591475 NOVA2Q9UNW9 492 aaKnown RBP11.77□□□□□ -0.53
VPS4B-206ENST00000591475 DNM3Q9UQ16 869 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 GTPBP10A4D1E9 387 aaKnown RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 FAM196BA6NMK8 535 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 USP17L15C9J2P7 530 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 USP17L13C9JLJ4 530 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 USP17L11C9JVI0 530 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 USP17L18D6R9N7 530 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 USP17L22D6RA61 530 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 USP17L17D6RBQ6 530 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 USP17L19D6RCP7 530 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 USP17L20D6RJB6 530 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 DDX3XO00571 662 aaKnown RBP eCLIP11.76□□□□□ -0.532e-6■■□□□ 11.9
VPS4B-206ENST00000591475 HOXD13P35453 343 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 STAT1P42224 750 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 HIRAP54198 1017 aaPredicted RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 EIF3BP55884 814 aaKnown RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 DHX9Q08211 1270 aaKnown RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 USP17L24Q0WX57 530 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 BMT2Q1RMZ1 405 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 KRT71Q3SY84 523 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 USP17L6PQ6QN14 398 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 KCTD1Q719H9 257 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 CATSPER3Q86XQ3 398 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 CCDC114Q96M63 670 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 RAB17Q9H0T7 212 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 KLC4Q9NSK0 619 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 PGAP2Q9UHJ9 254 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 AJAP1Q9UKB5 411 aaPredicted RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 DIS3Q9Y2L1 958 aaKnown RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 STK24Q9Y6E0 443 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 ASTN2O75129 1339 aaPredicted RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 C5orf60A6NFR6 353 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 F8VZ95 297 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 MPHOSPH10O00566 681 aaKnown RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 CHUKO15111 745 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 RASSF9O75901 435 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 AKAP3O75969 853 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 RPA1P27694 616 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 TMOD1P28289 359 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 GALCP54803 685 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 GSCP56915 257 aaPredicted RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 MAGOHP61326 146 aaKnown RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 MAP3K10Q02779 954 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 PABPC4Q13310 644 aaKnown RBP eCLIP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 PPP2R5EQ16537 467 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 CACNA2D3Q8IZS8 1091 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 RAPGEF5Q92565 580 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 MAGOHBQ96A72 148 aaKnown RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 SEC16BQ96JE7 1060 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 DPH5Q9H2P9 285 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 CNOT10Q9H9A5 744 aaKnown RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 GGA3Q9NZ52 723 aa11.76□□□□□ -0.53
VPS4B-206ENST00000591475 CNOT8Q9UFF9 292 aaKnown RBP11.76□□□□□ -0.53
VPS4B-206ENST00000591475 NCANO14594 1321 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 IQCA1LA6NCM1 817 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 DCAF8L1A6NGE4 600 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 TBX3O15119 743 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 PPFIA2O75334 1257 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 RDXP35241 583 aaKnown RBP11.75□□□□□ -0.53
VPS4B-206ENST00000591475 PSMC6P62333 389 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 IFFO1Q0D2I5 559 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 AP3B2Q13367 1082 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 QPCTQ16769 361 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 TMEM179Q6ZVK1 233 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 USP50Q70EL3 339 aaPredicted RBP11.75□□□□□ -0.53
VPS4B-206ENST00000591475 SLC35C1Q96A29 364 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 HOOK2Q96ED9 719 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 TEPSINQ96N21 525 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 NAP1L3Q99457 506 aaPredicted RBP11.75□□□□□ -0.53
VPS4B-206ENST00000591475 FMO2Q99518 471 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 CELF4Q9BZC1 486 aaKnown RBP11.75□□□□□ -0.53
VPS4B-206ENST00000591475 SLC40A1Q9NP59 571 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 PPP2R3BQ9Y5P8 575 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 ASTN1O14525 1302 aa11.75□□□□□ -0.53
VPS4B-206ENST00000591475 MEIS1O00470 390 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 TBCAO75347 108 aaKnown RBP11.74□□□□□ -0.53
VPS4B-206ENST00000591475 GCNT3O95395 438 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 FGGP02679 453 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 TMEM253P0C7T8 217 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 SLURP2P0DP57 97 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 MAP2K2P36507 400 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 CASP4P49662 377 aa11.74□□□□□ -0.53
VPS4B-206ENST00000591475 PTENP60484 403 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms