RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 CCNE1P24864 410 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 ADAM17P78536 824 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 PAK1Q13153 545 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 FAM47CQ5HY64 1035 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 C1orf53Q5VUE5 145 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 CDKAL1Q5VV42 579 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 PLA2G4FQ68DD2 849 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 CENPPQ6IPU0 288 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 NFRKBQ6P4R8 1299 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 PADI6Q6TGC4 694 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 EPM2AIP1Q7L775 607 aaPredicted RBP11.55□□□□□ -0.56
VPS4B-204ENST00000589604 SFR1Q86XK3 245 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 IRF2BP1Q8IU81 584 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 FAM126BQ8IXS8 530 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 GUF1Q8N442 669 aaKnown RBP11.55□□□□□ -0.56
VPS4B-204ENST00000589604 LMBR1Q8WVP7 490 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 CEP89Q96ST8 783 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 AZI2Q9H6S1 392 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 GTF2IRD1Q9UHL9 959 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 TCEAL9Q9UHQ7 104 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 ATP11BQ9Y2G3 1177 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 SFI1A8K8P3 1242 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 HOXD13P35453 343 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 ZNF75DP51815 510 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 CASP5P51878 434 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 CCDC173Q0VFZ6 552 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 FAAP100Q0VG06 881 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 HERC4Q5GLZ8 1057 aaPredicted RBP11.55□□□□□ -0.56
VPS4B-204ENST00000589604 FAM160B1Q5W0V3 765 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 ANKRD40Q6AI12 368 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 APTXQ7Z2E3 356 aaKnown RBP11.55□□□□□ -0.56
VPS4B-204ENST00000589604 ANKRD33Q7Z3H0 272 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 SESTD1Q86VW0 696 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 ATP8B4Q8TF62 1192 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 DHX38Q92620 1227 aaKnown RBP11.55□□□□□ -0.56
VPS4B-204ENST00000589604 ATP6V0A1Q93050 837 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 P2RX5Q93086 422 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 TBC1D7Q9P0N9 293 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 ZNF215Q9UL58 517 aaPredicted RBP11.55□□□□□ -0.56
VPS4B-204ENST00000589604 ODF2LQ9ULJ1 636 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 EVPLQ92817 2033 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 RANBP2P49792 3224 aaKnown RBP11.54□□□□□ -0.56
VPS4B-204ENST00000589604 TREHO43280 583 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 HIP1RO75146 1068 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 OATP04181 439 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 KRT18P05783 430 aaKnown RBP11.54□□□□□ -0.56
VPS4B-204ENST00000589604 CYP2C9P11712 490 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 ITGB8P26012 769 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 IGBP1P78318 339 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 FANCCQ00597 558 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 TARBP2Q15633 366 aaKnown RBP11.54□□□□□ -0.56
VPS4B-204ENST00000589604 GRIK4Q16099 956 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 ZCWPW2Q504Y3 356 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 XKR3Q5GH77 459 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 RUFY4Q6ZNE9 571 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 C7orf31Q8N865 590 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 SCFD1Q8WVM8 642 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 KATNAL1Q9BW62 490 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 STRA6Q9BX79 667 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 OLFML3Q9NRN5 406 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 TRPC6Q9Y210 931 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 COL4A3BPQ9Y5P4 624 aa11.54□□□□□ -0.56
VPS4B-204ENST00000589604 PSMA7O14818 248 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 DKC1O60832 514 aaKnown RBP eCLIP11.53□□□□□ -0.56
VPS4B-204ENST00000589604 SLC34A2O95436 690 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 GAP43P17677 238 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 PPP1R2P41236 205 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 PPFIA1Q13136 1202 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 XKR9Q5GH70 373 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 FOXR2Q6PJQ5 311 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 NIFKQ9BYG3 293 aaKnown RBP11.53□□□□□ -0.56
VPS4B-204ENST00000589604 KCTD10Q9H3F6 313 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 XPNPEP1Q9NQW7 623 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 INTS13Q9NVM9 706 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 UMODL1Q5DID0 1318 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 CEP290O15078 2479 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 KAT6AQ92794 2004 aa11.53□□□□□ -0.56
VPS4B-204ENST00000589604 C17orf102A2RUQ5 167 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 MBLAC1A4D2B0 266 aaPredicted RBP11.52□□□□□ -0.56
VPS4B-204ENST00000589604 TRIM43BA6NCK2 446 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 USO1O60763 962 aaKnown RBP11.52□□□□□ -0.56
VPS4B-204ENST00000589604 MYBP10242 640 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 SLC26A2P50443 739 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 STIM1Q13586 685 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 PTGISQ16647 500 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 BMT2Q1RMZ1 405 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 TRIM71Q2Q1W2 868 aaKnown RBP11.52□□□□□ -0.56
VPS4B-204ENST00000589604 HSP90AA4PQ58FG1 418 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 OTUD6AQ7L8S5 288 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 GPIHBP1Q8IV16 184 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 C7orf61Q8IZ16 206 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 MYOCDQ8IZQ8 938 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 ZNF507Q8TCN5 953 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 TRIM43Q96BQ3 446 aaPredicted RBP11.52□□□□□ -0.56
VPS4B-204ENST00000589604 NAP1L5Q96NT1 182 aaPredicted RBP11.52□□□□□ -0.56
VPS4B-204ENST00000589604 OSBPL7Q9BZF2 842 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 TRIM5Q9C035 493 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 ZHX3Q9H4I2 956 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 PARVGQ9HBI0 331 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 CYP26B1Q9NR63 512 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms