RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 ARMCX5Q6P1M9 558 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 ANO5Q75V66 913 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 FILIP1Q7Z7B0 1213 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 TLK2Q86UE8 772 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 ZNF784Q8NCA9 323 aaPredicted RBP6.8□□□□□ -1.32
LIG3-206ENST00000586058 CCDC112Q8NEF3 446 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 ATP8B4Q8TF62 1192 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 EMID1Q96A84 441 aaPredicted RBP6.8□□□□□ -1.32
LIG3-206ENST00000586058 FGD4Q96M96 766 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 SCLT1Q96NL6 688 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 MAP7D2Q96T17 732 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 TUBGCP2Q9BSJ2 902 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 NOC4LQ9BVI4 516 aaKnown RBP6.8□□□□□ -1.32
LIG3-206ENST00000586058 POLR3FQ9H1D9 316 aaPredicted RBP6.8□□□□□ -1.32
LIG3-206ENST00000586058 C2orf40Q9H1Z8 148 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 SAMSN1Q9NSI8 373 aaKnown RBP6.8□□□□□ -1.32
LIG3-206ENST00000586058 WRAP73Q9P2S5 460 aaPredicted RBP6.8□□□□□ -1.32
LIG3-206ENST00000586058 FAM184BQ9ULE4 1060 aa6.8□□□□□ -1.32
LIG3-206ENST00000586058 TRIP12Q14669 1992 aaPredicted RBP6.8□□□□□ -1.32
LIG3-206ENST00000586058 IGKV6D-21A0A0A0MT36 114 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 A0A1B0GTH6 734 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 GSTTP1A0A1W2PQM5 241 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 HNRNPDLO14979 420 aaKnown RBP6.79□□□□□ -1.32
LIG3-206ENST00000586058 KIAA0391O15091 583 aaKnown RBP6.79□□□□□ -1.32
LIG3-206ENST00000586058 MAGEB2O15479 319 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 CCP110O43303 1012 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 KPNA6O60684 536 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 PPFIA4O75335 1185 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 LGR5O75473 907 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 PRPF6O94906 941 aaKnown RBP6.79□□□□□ -1.32
LIG3-206ENST00000586058 ARIH2O95376 493 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 LGALS2P05162 132 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 MMP3P08254 477 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 MYBP10242 640 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 XRCC5P13010 732 aaKnown RBP6.79□□□□□ -1.32
LIG3-206ENST00000586058 ZNF18P17022 549 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 TRIM21P19474 475 aaKnown RBP6.79□□□□□ -1.32
LIG3-206ENST00000586058 CNGA1P29973 690 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 NMT1P30419 496 aaKnown RBP6.79□□□□□ -1.32
LIG3-206ENST00000586058 PBX2P40425 430 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 NAMPTP43490 491 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 LIG4P49917 911 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 COPB1P53618 953 aaKnown RBP6.79□□□□□ -1.32
LIG3-206ENST00000586058 NCKAP1LP55160 1127 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 NPEPPSP55786 919 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 SP2Q02086 613 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 UBXN1Q04323 297 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 ARHGAP1Q07960 439 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 CETN1Q12798 172 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 ADAM9Q13443 819 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 KRT31Q15323 416 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 HSDL1Q3SXM5 330 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 ZNF484Q5JVG2 852 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 TCERG1LQ5VWI1 586 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 IER5Q5VY09 327 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 ANKRD40Q6AI12 368 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 HAUS6Q7Z4H7 955 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 APBB1IPQ7Z5R6 666 aaPredicted RBP6.79□□□□□ -1.32
LIG3-206ENST00000586058 CNGA4Q8IV77 575 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 ZNF397Q8NF99 534 aaPredicted RBP6.79□□□□□ -1.32
LIG3-206ENST00000586058 NPLOC4Q8TAT6 608 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 ZNF507Q8TCN5 953 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 RAET1EQ8TD07 263 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 SPIRE2Q8WWL2 714 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 PSPC1Q8WXF1 523 aaKnown RBP6.79□□□□□ -1.32
LIG3-206ENST00000586058 HPS3Q969F9 1004 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 NUP58Q9BVL2 599 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 NIFKQ9BYG3 293 aaKnown RBP6.79□□□□□ -1.32
LIG3-206ENST00000586058 VPS16Q9H269 839 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 ST6GALNAC4Q9H4F1 302 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 TAB2Q9NYJ8 693 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 LIMA1Q9UHB6 759 aaKnown RBP6.79□□□□□ -1.32
LIG3-206ENST00000586058 TRAF3IP3Q9Y228 551 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 Q9Y3F1 56 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.79□□□□□ -1.32
LIG3-206ENST00000586058 UTRNP46939 3433 aa6.79□□□□□ -1.32
LIG3-206ENST00000586058 ITIH6Q6UXX5 1313 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 TDRD15B5MCY1 1934 aaKnown RBP6.78□□□□□ -1.32
LIG3-206ENST00000586058 DENND3A2RUS2 1198 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 RRN3P2A6NIE6 340 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 SFI1A8K8P3 1242 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 LGALS16A8MUM7 142 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 ZBTB39O15060 712 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 SLC16A4O15374 487 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 ASAP2O43150 1006 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 ZNF862O60290 1169 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 STX10O60499 249 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 EXOC3O60645 756 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 AOC2O75106 756 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 N4BP1O75113 896 aaKnown RBP6.78□□□□□ -1.32
LIG3-206ENST00000586058 CLSTN1O94985 981 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 SNAI1O95863 264 aaPredicted RBP6.78□□□□□ -1.32
LIG3-206ENST00000586058 NR3C1P04150 777 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 RPLP2P05387 115 aaKnown RBP6.78□□□□□ -1.32
LIG3-206ENST00000586058 ZNF286BP0CG31 522 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 RARBP10826 455 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 GNAT1P11488 350 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 PSMC2P35998 433 aaKnown RBP6.78□□□□□ -1.32
LIG3-206ENST00000586058 PHKA2P46019 1235 aa6.78□□□□□ -1.32
LIG3-206ENST00000586058 EFNA5P52803 228 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms