RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PSMC5P62195 406 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 COASYQ13057 564 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 PPP2R5CQ13362 524 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 PLA2G4FQ68DD2 849 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 POTEDQ86YR6 584 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 THNSL1Q8IYQ7 743 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 NSUN7Q8NE18 718 aaKnown RBP22.97■■□□□ 1.27
SHMT1-209ENST00000582653 NLRP7Q8WX94 980 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 TNFRSF25Q93038 417 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 POP1Q99575 1024 aaKnown RBP22.97■■□□□ 1.27
SHMT1-209ENST00000582653 CHST12Q9NRB3 414 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 RNF19AQ9NV58 838 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 WRAP73Q9P2S5 460 aaPredicted RBP22.97■■□□□ 1.27
SHMT1-209ENST00000582653 DCXO43602 365 aa22.96■■□□□ 1.27
SHMT1-209ENST00000582653 MARCH6O60337 910 aa22.96■■□□□ 1.27
SHMT1-209ENST00000582653 MAFO75444 373 aaPredicted RBP22.96■■□□□ 1.27
SHMT1-209ENST00000582653 PLA2G5P39877 138 aa22.96■■□□□ 1.27
SHMT1-209ENST00000582653 ZNF579Q8NAF0 562 aaKnown RBP22.96■■□□□ 1.27
SHMT1-209ENST00000582653 GCOM2Q9BZD3 368 aaPredicted RBP22.96■■□□□ 1.27
SHMT1-209ENST00000582653 DACT1Q9NYF0 836 aa22.96■■□□□ 1.27
SHMT1-209ENST00000582653 PUF60Q9UHX1 559 aaKnown RBP22.96■■□□□ 1.27
SHMT1-209ENST00000582653 HCN4Q9Y3Q4 1203 aa22.96■■□□□ 1.27
SHMT1-209ENST00000582653 PCDHGC5Q9Y5F6 944 aa22.96■■□□□ 1.27
SHMT1-209ENST00000582653 QARSP47897 775 aaKnown RBP22.95■■□□□ 1.26
SHMT1-209ENST00000582653 NPEPPSP55786 919 aa22.95■■□□□ 1.26
SHMT1-209ENST00000582653 ST3GAL1Q11201 340 aa22.95■■□□□ 1.26
SHMT1-209ENST00000582653 KCNT2Q6UVM3 1135 aa22.95■■□□□ 1.26
SHMT1-209ENST00000582653 ABI1Q8IZP0 508 aa22.95■■□□□ 1.26
SHMT1-209ENST00000582653 MRPS27Q92552 414 aaKnown RBP22.95■■□□□ 1.26
SHMT1-209ENST00000582653 FAM122AQ96E09 287 aa22.95■■□□□ 1.26
SHMT1-209ENST00000582653 CDCA3Q99618 268 aaPredicted RBP22.95■■□□□ 1.26
SHMT1-209ENST00000582653 PLXNA4Q9HCM2 1894 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 C5orf42Q9H799 3197 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 A0A087WZ62 844 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 FSD2A1L4K1 749 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 FSCN2O14926 492 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 PER2O15055 1255 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 TBX3O15119 743 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 GLP2RO95838 553 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 CENPBP07199 599 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-209ENST00000582653 NCAPH2Q6IBW4 605 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 ZNF598Q86UK7 904 aaKnown RBP22.94■■□□□ 1.26
SHMT1-209ENST00000582653 KSR1Q8IVT5 923 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 SMRP1Q8NCR6 262 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 NAP1L4Q99733 375 aaKnown RBP22.94■■□□□ 1.26
SHMT1-209ENST00000582653 FDXACB1Q9BRP7 624 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-209ENST00000582653 TRAIPQ9BWF2 469 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 INO80BQ9C086 356 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-209ENST00000582653 RGL1Q9NZL6 768 aa22.94■■□□□ 1.26
SHMT1-209ENST00000582653 SUCLA2Q9P2R7 463 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-209ENST00000582653 BTBD18B2RXH4 712 aa22.93■■□□□ 1.26
SHMT1-209ENST00000582653 DKC1O60832 514 aaKnown RBP eCLIP22.93■■□□□ 1.26
SHMT1-209ENST00000582653 P4HBP07237 508 aaKnown RBP22.93■■□□□ 1.26
SHMT1-209ENST00000582653 KRT17Q04695 432 aa22.93■■□□□ 1.26
SHMT1-209ENST00000582653 DUSP6Q16828 381 aa22.93■■□□□ 1.26
SHMT1-209ENST00000582653 ZNF410Q86VK4 478 aa22.93■■□□□ 1.26
SHMT1-209ENST00000582653 RHPN2Q8IUC4 686 aa22.93■■□□□ 1.26
SHMT1-209ENST00000582653 LRRC43Q8N309 656 aa22.93■■□□□ 1.26
SHMT1-209ENST00000582653 RNF169Q8NCN4 708 aa22.93■■□□□ 1.26
SHMT1-209ENST00000582653 ZNF558Q96NG5 402 aa22.93■■□□□ 1.26
SHMT1-209ENST00000582653 JPH2Q9BR39 696 aaPredicted RBP22.93■■□□□ 1.26
SHMT1-209ENST00000582653 BRMS1Q9HCU9 246 aa22.93■■□□□ 1.26
SHMT1-209ENST00000582653 NGRNQ9NPE2 291 aaKnown RBP22.93■■□□□ 1.26
SHMT1-209ENST00000582653 CYP26B1Q9NR63 512 aa22.93■■□□□ 1.26
SHMT1-209ENST00000582653 WNT7AO00755 349 aa22.92■■□□□ 1.26
SHMT1-209ENST00000582653 EIF5BO60841 1220 aaKnown RBP22.92■■□□□ 1.26
SHMT1-209ENST00000582653 SPIRE1Q08AE8 756 aa22.92■■□□□ 1.26
SHMT1-209ENST00000582653 EPHA7Q15375 998 aa22.92■■□□□ 1.26
SHMT1-209ENST00000582653 CLLU1OSQ5K130 101 aa22.92■■□□□ 1.26
SHMT1-209ENST00000582653 TMEM184AQ6ZMB5 413 aa22.92■■□□□ 1.26
SHMT1-209ENST00000582653 DYDC2Q96IM9 177 aa22.92■■□□□ 1.26
SHMT1-209ENST00000582653 BARX2Q9UMQ3 279 aaPredicted RBP22.92■■□□□ 1.26
SHMT1-209ENST00000582653 ZBTB39O15060 712 aa22.91■■□□□ 1.26
SHMT1-209ENST00000582653 BAG4O95429 457 aaKnown RBP22.91■■□□□ 1.26
SHMT1-209ENST00000582653 PPM1AP35813 382 aa22.91■■□□□ 1.26
SHMT1-209ENST00000582653 KCNC3Q14003 757 aa22.91■■□□□ 1.26
SHMT1-209ENST00000582653 CTTNQ14247 550 aaKnown RBP22.91■■□□□ 1.26
SHMT1-209ENST00000582653 RNF135Q8IUD6 432 aa22.91■■□□□ 1.26
SHMT1-209ENST00000582653 DIS3L2Q8IYB7 885 aaKnown RBP22.91■■□□□ 1.26
SHMT1-209ENST00000582653 EXOC8Q8IYI6 725 aa22.91■■□□□ 1.26
SHMT1-209ENST00000582653 CEP170P1Q96L14 293 aa22.91■■□□□ 1.26
SHMT1-209ENST00000582653 LXNQ9BS40 222 aa22.91■■□□□ 1.26
SHMT1-209ENST00000582653 BMP2KQ9NSY1 1161 aaPredicted RBP22.91■■□□□ 1.26
SHMT1-209ENST00000582653 SPG21Q9NZD8 308 aa22.91■■□□□ 1.26
SHMT1-209ENST00000582653 ATF7P17544 494 aaPredicted RBP22.9■■□□□ 1.26
SHMT1-209ENST00000582653 SFPQP23246 707 aaKnown RBP eCLIP22.9■■□□□ 1.26
SHMT1-209ENST00000582653 PHKA2P46019 1235 aa22.9■■□□□ 1.26
SHMT1-209ENST00000582653 CYP4A11Q02928 519 aa22.9■■□□□ 1.26
SHMT1-209ENST00000582653 HERC4Q5GLZ8 1057 aaPredicted RBP22.9■■□□□ 1.26
SHMT1-209ENST00000582653 SLFN12Q8IYM2 578 aa22.9■■□□□ 1.26
SHMT1-209ENST00000582653 HELQQ8TDG4 1101 aa22.9■■□□□ 1.26
SHMT1-209ENST00000582653 RSPH1Q8WYR4 309 aa22.9■■□□□ 1.26
SHMT1-209ENST00000582653 NLRP4Q96MN2 994 aa22.9■■□□□ 1.26
SHMT1-209ENST00000582653 TCF25Q9BQ70 676 aa22.9■■□□□ 1.26
SHMT1-209ENST00000582653 PPME1Q9Y570 386 aa22.9■■□□□ 1.26
SHMT1-209ENST00000582653 SKIP12755 728 aa22.89■■□□□ 1.25
SHMT1-209ENST00000582653 YWHABP31946 246 aaKnown RBP22.89■■□□□ 1.25
SHMT1-209ENST00000582653 GUCY1B3Q02153 619 aa22.89■■□□□ 1.25
SHMT1-209ENST00000582653 TRIM29Q14134 588 aa22.89■■□□□ 1.25
SHMT1-209ENST00000582653 C4orf19Q8IY42 314 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms