RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 OTUD6AQ7L8S5 288 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 ABI1Q8IZP0 508 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 SMRP1Q8NCR6 262 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 NLRP7Q8WX94 980 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 SLC7A3Q8WY07 619 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 CD320Q9NPF0 282 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 STK39Q9UEW8 545 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 CD207Q9UJ71 328 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 RBAK-RBAKDNI3L0D1 243 aa16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 EML1O00423 815 aa16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 MBTPS2O43462 519 aa16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 CCNT1O60563 726 aaKnown RBP16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 TBX10O75333 385 aa16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 KRT2P35908 639 aa16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 ORC2Q13416 577 aaPredicted RBP16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 KCNC3Q14003 757 aa16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 MTERF2Q49AM1 385 aa16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 SRGAP1Q7Z6B7 1085 aa16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 MRPS27Q92552 414 aaKnown RBP16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 LARP6Q9BRS8 491 aaKnown RBP16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 EPHX3Q9H6B9 360 aa16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 ZSWIM4Q9H7M6 989 aa16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 SUCLA2Q9P2R7 463 aaPredicted RBP16.24■□□□□ 0.19
SMARCE1-216ENST00000580419 DDX11L8A8MPP1 907 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 FGFR1P11362 822 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 XRCC6P12956 609 aaKnown RBP eCLIP16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 ATF7P17544 494 aaPredicted RBP16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 PHKA2P46019 1235 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 GATMP50440 423 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 KRT17Q04695 432 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 DRP2Q13474 957 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 ME3Q16798 604 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 KCNT2Q6UVM3 1135 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 PIK3AP1Q6ZUJ8 805 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 TRMT1LQ7Z2T5 733 aaKnown RBP16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 NSUN7Q8NE18 718 aaKnown RBP16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 TCP11Q8WWU5 503 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 GJA10Q969M2 543 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 ZNF558Q96NG5 402 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 IFT122Q9HBG6 1241 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 ARID2Q68CP9 1835 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 MUC6Q6W4X9 2439 aa16.23■□□□□ 0.19
SMARCE1-216ENST00000580419 A0A087WZ62 844 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 PRR33A8MZF0 331 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 SRGAP2BP0DMP2 458 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 IRS1P35568 1242 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 DLX2Q07687 328 aaPredicted RBP16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 MXD4Q14582 209 aaPredicted RBP16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 DUSP6Q16828 381 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 CLLU1OSQ5K130 101 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 SPOUT1Q5T280 376 aaKnown RBP16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 LRRC55Q6ZSA7 311 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 IFNLR1Q8IU57 520 aaPredicted RBP16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 THNSL1Q8IYQ7 743 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 OXER1Q8TDS5 423 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 PSPC1Q8WXF1 523 aaKnown RBP16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 SCLT1Q96NL6 688 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 HSD17B14Q9BPX1 270 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 FDXACB1Q9BRP7 624 aaPredicted RBP16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 LRFN3Q9BTN0 628 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 TLE6Q9H808 572 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 SPG21Q9NZD8 308 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 CLEC1BQ9P126 229 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 COL4A3BPQ9Y5P4 624 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 IRAK3Q9Y616 596 aa16.22■□□□□ 0.19
SMARCE1-216ENST00000580419 GLP2RO95838 553 aa16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 HOXB8P17481 243 aaPredicted RBP16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 YWHABP31946 246 aaKnown RBP16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 NDUFV1P49821 464 aa16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 POLGP54098 1239 aaPredicted RBP16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 CBX2Q14781 532 aaPredicted RBP16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 MRPL10Q7Z7H8 261 aaKnown RBP16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 CCDC51Q96ER9 411 aa16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 CEP170P1Q96L14 293 aa16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 LLPHQ9BRT6 129 aaKnown RBP16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 LXNQ9BS40 222 aa16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 NFKBIZQ9BYH8 718 aa16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 C11orf16Q9NQ32 467 aa16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 ANKEF1Q9NU02 776 aa16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 AGPAT5Q9NUQ2 364 aa16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 PCDHA12Q9UN75 941 aa16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 ZNF318Q5VUA4 2279 aa16.21■□□□□ 0.19
SMARCE1-216ENST00000580419 CNTNAP2Q9UHC6 1331 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 DCXO43602 365 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 SLITRK3O94933 977 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 AXLP30530 894 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 SSTR3P32745 418 aaPredicted RBP16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 NRIP1P48552 1158 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 ALDH7A1P49419 539 aaKnown RBP16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 NEK4P51957 841 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 GIT2Q14161 759 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 BMS1Q14692 1282 aaKnown RBP16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 HERC4Q5GLZ8 1057 aaPredicted RBP16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 ADGRD2Q7Z7M1 963 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 RHPN2Q8IUC4 686 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 SLC39A11Q8N1S5 342 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 CNNM3Q8NE01 707 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 SUSD6Q92537 303 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 KHSRPQ92945 711 aaKnown RBP eCLIP16.2■□□□□ 0.186e-7■■■■■ 30.3
SMARCE1-216ENST00000580419 PGBD4Q96DM1 585 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms