RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 LRRC71Q8N4P6 559 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 ANKLE1Q8NAG6 615 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 ASAP3Q8TDY4 903 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 U2AF1L4Q8WU68 220 aaKnown RBP11.85□□□□□ -0.51
SS18-213ENST00000579640 HPS3Q969F9 1004 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 HVCN1Q96D96 273 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 DHTKD1Q96HY7 919 aaPredicted RBP11.85□□□□□ -0.51
SS18-213ENST00000579640 KMT5AQ9NQR1 393 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 STARD7Q9NQZ5 370 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 TBC1D7Q9P0N9 293 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 CCDC169A6NNP5 214 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 K7ENM7 598 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 TFRCP02786 760 aaKnown RBP11.84□□□□□ -0.51
SS18-213ENST00000579640 PRCPP42785 496 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 GJA8P48165 433 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 ZNF165P49910 485 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 CLCN3P51790 818 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 POU5F1BQ06416 359 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 LAMTOR4Q0VGL1 99 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 FAM47CQ5HY64 1035 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 C11orf57Q6ZUT1 292 aaPredicted RBP11.84□□□□□ -0.51
SS18-213ENST00000579640 SMYD4Q8IYR2 804 aaPredicted RBP11.84□□□□□ -0.51
SS18-213ENST00000579640 NME8Q8N427 588 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 DEPTORQ8TB45 409 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 ZNF507Q8TCN5 953 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 FAM200AQ8TCP9 573 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 PRPF31Q8WWY3 499 aaKnown RBP11.84□□□□□ -0.51
SS18-213ENST00000579640 BSNDQ8WZ55 320 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 MCOLN1Q9GZU1 580 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 GRIN2DO15399 1336 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 EVPLQ92817 2033 aa11.84□□□□□ -0.51
SS18-213ENST00000579640 TREHO43280 583 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 PPP1R37O75864 691 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 CD44P16070 742 aaKnown RBP11.83□□□□□ -0.51
SS18-213ENST00000579640 NMT1P30419 496 aaKnown RBP11.83□□□□□ -0.51
SS18-213ENST00000579640 GTF2BQ00403 316 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 PAK1Q13153 545 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 DRP2Q13474 957 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 FOXR2Q6PJQ5 311 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 HAUS6Q7Z4H7 955 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 RHPN2Q8IUC4 686 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 KIAA0319LQ8IZA0 1049 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 SLC43A3Q8NBI5 491 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 SCFD1Q8WVM8 642 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 TMEM106CQ9BVX2 250 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 STRA6Q9BX79 667 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 C2orf40Q9H1Z8 148 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 ARHGAP28Q9P2N2 729 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 RWDD2AQ9UIY3 292 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 AKT3Q9Y243 479 aa11.83□□□□□ -0.51
SS18-213ENST00000579640 BICDL2A1A5D9 508 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 LRRIQ4A6NIV6 560 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 SLC16A4O15374 487 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 MYBP10242 640 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 EFNA5P52803 228 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 CAPSQ13938 189 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 HIC1Q14526 733 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 GDF6Q6KF10 455 aaPredicted RBP11.83□□□□□ -0.52
SS18-213ENST00000579640 RSPH3Q86UC2 560 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 ZNF410Q86VK4 478 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 ZBTB8OSQ8IWT0 167 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 TMEM161BQ8NDZ6 487 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 NFKBIZQ9BYH8 718 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 TMEM134Q9H6X4 195 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 TMEM206Q9H813 350 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 EXOC7Q9UPT5 735 aa11.83□□□□□ -0.52
SS18-213ENST00000579640 SMTNL1A8MU46 457 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 ARVCFO00192 962 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 CCNE1P24864 410 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 CASP5P51878 434 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 KNOP1Q1ED39 458 aaKnown RBP11.82□□□□□ -0.52
SS18-213ENST00000579640 L1TD1Q5T7N2 865 aaKnown RBP11.82□□□□□ -0.52
SS18-213ENST00000579640 CDCA2Q69YH5 1023 aaPredicted RBP11.82□□□□□ -0.52
SS18-213ENST00000579640 KLHL10Q6JEL2 608 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 RPAINQ86UA6 219 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 SERINC5Q86VE9 423 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 IFNLR1Q8IU57 520 aaPredicted RBP11.82□□□□□ -0.52
SS18-213ENST00000579640 RNF149Q8NC42 400 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 GLIS3Q8NEA6 775 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 ENOX1Q8TC92 643 aaKnown RBP11.82□□□□□ -0.52
SS18-213ENST00000579640 NELFBQ8WX92 580 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 P2RX5Q93086 422 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 ZBTB10Q96DT7 871 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 ACCSQ96QU6 501 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 FGFBP2Q9BYJ0 223 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 CTNND2Q9UQB3 1225 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 MAPK8IP1Q9UQF2 711 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 HTTP42858 3142 aa11.82□□□□□ -0.52
SS18-213ENST00000579640 DENND3A2RUS2 1198 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 BECN2A8MW95 431 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 IKBKBO14920 756 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 PRPF6O94906 941 aaKnown RBP11.81□□□□□ -0.52
SS18-213ENST00000579640 PHKA2P46019 1235 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 GPC3P51654 580 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 PTENP60484 403 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 SNRPFP62306 86 aaKnown RBP11.81□□□□□ -0.52
SS18-213ENST00000579640 ZNF200P98182 395 aaPredicted RBP11.81□□□□□ -0.52
SS18-213ENST00000579640 LRRC63Q05C16 580 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 PTK7Q13308 1070 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 PTGISQ16647 500 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms