RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 MAP3K20Q9NYL2 800 aaKnown RBP11.32□□□□□ -0.6
SS18-210ENST00000578700 LRWD1Q9UFC0 647 aa11.32□□□□□ -0.6
SS18-210ENST00000578700 ZNF215Q9UL58 517 aaPredicted RBP11.32□□□□□ -0.6
SS18-210ENST00000578700 STK24Q9Y6E0 443 aa11.32□□□□□ -0.6
SS18-210ENST00000578700 DOCK5Q9H7D0 1870 aa11.32□□□□□ -0.6
SS18-210ENST00000578700 TECTAO75443 2155 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 ZDBF2Q9HCK1 2354 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 MYO15AQ9UKN7 3530 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 C5orf67F2Z3F1 127 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 MEIS2O14770 477 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 CAND2O75155 1236 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 TBX10O75333 385 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 TDP2O95551 362 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 MYL1P05976 194 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 MARK3P27448 753 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 FXR2P51116 673 aaKnown RBP eCLIP11.31□□□□□ -0.6
SS18-210ENST00000578700 PLCB2Q00722 1185 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 SMAD4Q13485 552 aaKnown RBP11.31□□□□□ -0.6
SS18-210ENST00000578700 PNOCQ13519 176 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 PDIA5Q14554 519 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 PAN2Q504Q3 1202 aaKnown RBP11.31□□□□□ -0.6
SS18-210ENST00000578700 HERC4Q5GLZ8 1057 aaPredicted RBP11.31□□□□□ -0.6
SS18-210ENST00000578700 KRT79Q5XKE5 535 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 METTL7BQ6UX53 244 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 RUFY4Q6ZNE9 571 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 RBM23Q86U06 439 aaKnown RBP11.31□□□□□ -0.6
SS18-210ENST00000578700 CABP7Q86V35 215 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 PRSS33Q8NF86 280 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 LMBR1Q8WVP7 490 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 EDAQ92838 391 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 CCDC47Q96A33 483 aaKnown RBP11.31□□□□□ -0.6
SS18-210ENST00000578700 CCSER1Q9C0I3 900 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 LRRC27Q9C0I9 530 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 CBX8Q9HC52 389 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 RMND1Q9NWS8 449 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 TUBE1Q9UJT0 475 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 RWDD3Q9Y3V2 267 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 VPS13AQ96RL7 3174 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 ADGRA3Q8IWK6 1321 aa11.31□□□□□ -0.6
SS18-210ENST00000578700 SPTBN4Q9H254 2564 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 BAZ2BQ9UIF8 2168 aaKnown RBP11.3□□□□□ -0.6
SS18-210ENST00000578700 TMEM221A6NGB7 291 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 M0R296 226 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 BIN1O00499 593 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 TBX3O15119 743 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 SLC26A4O43511 780 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 ACTN4O43707 911 aaKnown RBP11.3□□□□□ -0.6
SS18-210ENST00000578700 HOXC8P31273 242 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 SREBF1P36956 1147 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 TECP42680 631 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 IGBP1P78318 339 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 MRPS9P82933 396 aaKnown RBP11.3□□□□□ -0.6
SS18-210ENST00000578700 AMPD3Q01432 767 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 ADAM15Q13444 863 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 FAM26DQ5JW98 314 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 ADGRD2Q7Z7M1 963 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 RSPH3Q86UC2 560 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 SUGP1Q8IWZ8 645 aaKnown RBP11.3□□□□□ -0.6
SS18-210ENST00000578700 ERMNQ8TAM6 284 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 DNAJB3Q8WWF6 145 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 PPP2R3CQ969Q6 453 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 BPIFA3Q9BQP9 254 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 GTPBP4Q9BZE4 634 aaKnown RBP11.3□□□□□ -0.6
SS18-210ENST00000578700 TMEM60Q9H2L4 133 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 DISC1Q9NRI5 854 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 PCDHA12Q9UN75 941 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 PLAGL2Q9UPG8 496 aa11.3□□□□□ -0.6
SS18-210ENST00000578700 CYP3A7-CYP3A51PA0A087WV96 503 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 SPATA31C2B4DYI2 1134 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 PTMAP06454 111 aaKnown RBP11.29□□□□□ -0.6
SS18-210ENST00000578700 CYP3A7P24462 503 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 DNAJB1P25685 340 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 ICAM3P32942 547 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 AFMP43652 599 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 NRIP1P48552 1158 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 PTPN5P54829 565 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 GHRHRQ02643 423 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 SEMA3FQ13275 785 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 LPIN1Q14693 890 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 IL17AQ16552 155 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 Q4G0T1 1027 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 CT47A1Q5JQC4 288 aaPredicted RBP11.29□□□□□ -0.6
SS18-210ENST00000578700 TRIM67Q6ZTA4 783 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 USP49Q70CQ1 688 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 IGSF22Q8N9C0 903 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 MLKLQ8NB16 471 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 MICAL1Q8TDZ2 1067 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 POF1BQ8WVV4 589 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 CLP1Q92989 425 aaKnown RBP11.29□□□□□ -0.6
SS18-210ENST00000578700 PAGE5Q96GU1 130 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 RPGRIP1Q96KN7 1286 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 SNX27Q96L92 541 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 FAM20AQ96MK3 541 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 GSDMAQ96QA5 445 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 MTMR9Q96QG7 549 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 TTC12Q9H892 705 aaPredicted RBP11.29□□□□□ -0.6
SS18-210ENST00000578700 FAM86C1Q9NVL1 165 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 PCDHA5Q9Y5H7 936 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 CDY2AQ9Y6F7 541 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 MRPL42Q9Y6G3 142 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms