RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	VPS36	Q86VN1	386 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	PROM2	Q8N271	834 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	RNF10	Q8N5U6	811 aa	Known RBP	16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	MYCBPAP	Q8TBZ2	947 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	CEP63	Q96MT8	703 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	PAIP2	Q9BPZ3	127 aa	Known RBP	16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	COA1	Q9GZY4	146 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	AZI2	Q9H6S1	392 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	UST	Q9Y2C2	406 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	IGKV6D-41	A0A0C4DH26	115 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	ARHGEF35	A5YM69	484 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	RPA1	P27694	616 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	FMO5	P49326	533 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	FAM133B	Q5BKY9	247 aa	Known RBP	16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	HS2ST1	Q7LGA3	356 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	RPUSD2	Q8IZ73	545 aa	Known RBP	16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	EPS8L3	Q8TE67	593 aa	Known RBP	16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	TBC1D31	Q96DN5	1066 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	LXN	Q9BS40	222 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	UNC45A	Q9H3U1	944 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	PI4KB	Q9UBF8	816 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	FRMD4B	Q9Y2L6	1034 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	PCDHGC5	Q9Y5F6	944 aa		16.05	■□□□□ 0.16
PRPF8-216	ENST00000577001	HNRNPH1	P31943	449 aa	Known RBP	16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	MDH1	P40925	334 aa	Known RBP	16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	PPP1R2	P41236	205 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	PEX3	P56589	373 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	PTGIS	Q16647	500 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	GJD4	Q96KN9	370 aa	Predicted RBP	16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	CCDC114	Q96M63	670 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	16.04	■□□□□ 0.16	1e-6	■■□□□ 13.5
PRPF8-216	ENST00000577001	INTS2	Q9H0H0	1204 aa	Known RBP	16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	SEMA4A	Q9H3S1	761 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	AIPL1	Q9NZN9	384 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	LCA5L	O95447	670 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	VIM	P08670	466 aa	Known RBP	16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	KRT5	P13647	590 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	ECHS1	P30084	290 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	MYL7	Q01449	175 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	NT5DC3	Q86UY8	548 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	GDAP1	Q8TB36	358 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	ACSF2	Q96CM8	615 aa	Predicted RBP	16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	SH3GL2	Q99962	352 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	ARAP2	Q8WZ64	1704 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	SPOP	O43791	374 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	PPP3CA	Q08209	521 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	SYCP2L	Q5T4T6	812 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	CCDC105	Q8IYK2	499 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	PARVG	Q9HBI0	331 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	CTNNAL1	Q9UBT7	734 aa		16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	UTP11	Q9Y3A2	253 aa	Known RBP	16.04	■□□□□ 0.16
PRPF8-216	ENST00000577001	NFIB	O00712	420 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	FAM102B	Q5T8I3	360 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	ALS2CL	Q60I27	953 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	SLC47A2	Q86VL8	602 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	SLFN12	Q8IYM2	578 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	CABS1	Q96KC9	395 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	TYW1	Q9NV66	732 aa	Known RBP	16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	HAUS2	Q9NVX0	235 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	TCEAL9	Q9UHQ7	104 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	ALG6	Q9Y672	507 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	KIAA1551	Q9HCM1	1747 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	AFF2	P51816	1311 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001		A0A087WUV0	522 aa	Predicted RBP	16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	CTNND1	O60716	968 aa	Known RBP	16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	RPL13	P26373	211 aa	Known RBP	16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	PSMC2	P35998	433 aa	Known RBP	16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	SLC29A2	Q14542	456 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	B4GALNT4	Q76KP1	1039 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	LRRC57	Q8N9N7	239 aa		16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001	DDX60L	Q5H9U9	1706 aa	Known RBP	16.03	■□□□□ 0.16
PRPF8-216	ENST00000577001		F8VZ95	297 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	CDC25C	P30307	473 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	CRY2	Q49AN0	593 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	KCNV1	Q6PIU1	500 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	KCNK9	Q9NPC2	374 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	MYO3B	Q8WXR4	1341 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	TESPA1	A2RU30	521 aa	Predicted RBP	16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	SOX5	P35711	763 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	DR1	Q01658	176 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	LONRF1	Q17RB8	773 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	CBWD2	Q8IUF1	395 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	ZDHHC14	Q8IZN3	488 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	RAPGEF5	Q92565	580 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	HAUS1	Q96CS2	278 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	DDX23	Q9BUQ8	820 aa	Known RBP	16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	RAVER2	Q9HCJ3	691 aa	Known RBP	16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	AGPAT3	Q9NRZ7	376 aa		16.02	■□□□□ 0.16
PRPF8-216	ENST00000577001	SCN7A	Q01118	1682 aa		16.02	■□□□□ 0.15
PRPF8-216	ENST00000577001		O00370	1275 aa		16.02	■□□□□ 0.15
PRPF8-216	ENST00000577001	PPIP5K2	O43314	1243 aa		16.02	■□□□□ 0.15
PRPF8-216	ENST00000577001	GNA14	O95837	355 aa		16.02	■□□□□ 0.15
PRPF8-216	ENST00000577001	MME	P08473	750 aa		16.02	■□□□□ 0.15
PRPF8-216	ENST00000577001	GCFC2	P16383	781 aa	Known RBP	16.02	■□□□□ 0.15
PRPF8-216	ENST00000577001	ITGB3BP	Q13352	177 aa	Predicted RBP	16.02	■□□□□ 0.15
PRPF8-216	ENST00000577001	SCARA3	Q6AZY7	606 aa		16.02	■□□□□ 0.15
PRPF8-216	ENST00000577001	CYFIP2	Q96F07	1278 aa		16.02	■□□□□ 0.15
PRPF8-216	ENST00000577001	QTRT2	Q9H974	415 aa	Known RBP	16.02	■□□□□ 0.15
PRPF8-216	ENST00000577001	VAV3	Q9UKW4	847 aa		16.02	■□□□□ 0.15

Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms