RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 NEK8Q86SG6 692 aa15.38■□□□□ 0.05
CCDC40-216ENST00000576241 COLGALT1Q8NBJ5 622 aa15.38■□□□□ 0.05
CCDC40-216ENST00000576241 WASF1Q92558 559 aa15.38■□□□□ 0.05
CCDC40-216ENST00000576241 NAP1L4Q99733 375 aaKnown RBP15.38■□□□□ 0.05
CCDC40-216ENST00000576241 NIFKQ9BYG3 293 aaKnown RBP15.38■□□□□ 0.05
CCDC40-216ENST00000576241 GCOM2Q9BZD3 368 aaPredicted RBP15.38■□□□□ 0.05
CCDC40-216ENST00000576241 TMEM117Q9H0C3 514 aa15.38■□□□□ 0.05
CCDC40-216ENST00000576241 TPCN1Q9ULQ1 816 aa15.38■□□□□ 0.05
CCDC40-216ENST00000576241 GVINP1Q7Z2Y8 2422 aa15.38■□□□□ 0.05
CCDC40-216ENST00000576241 MYH9P35579 1960 aaKnown RBP15.37■□□□□ 0.05
CCDC40-216ENST00000576241 LINC01565O15544 149 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 SLC37A4O43826 429 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 MARCH6O60337 910 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 PFKFB2O60825 505 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 DKC1O60832 514 aaKnown RBP eCLIP15.37■□□□□ 0.05
CCDC40-216ENST00000576241 TBX10O75333 385 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 FGF18O76093 207 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 NRIP1P48552 1158 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 PSMC5P62195 406 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 ADAM15Q13444 863 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 PPP4R3AQ6IN85 833 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 ADGRD2Q7Z7M1 963 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 ECHDC2Q86YB7 292 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 EFHBQ8N7U6 833 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 RNF169Q8NCN4 708 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 FAM20AQ96MK3 541 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 JPH2Q9BR39 696 aaPredicted RBP15.37■□□□□ 0.05
CCDC40-216ENST00000576241 DACT1Q9NYF0 836 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 ORC3Q9UBD5 711 aaPredicted RBP15.37■□□□□ 0.05
CCDC40-216ENST00000576241 CD207Q9UJ71 328 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 LOXHD1Q8IVV2 1947 aa15.37■□□□□ 0.05
CCDC40-216ENST00000576241 MED19A0JLT2 244 aaPredicted RBP15.36■□□□□ 0.05
CCDC40-216ENST00000576241 FSD2A1L4K1 749 aa15.36■□□□□ 0.05
CCDC40-216ENST00000576241 TMEM150BA6NC51 233 aa15.36■□□□□ 0.05
CCDC40-216ENST00000576241 CCNT1O60563 726 aaKnown RBP15.36■□□□□ 0.05
CCDC40-216ENST00000576241 FGFR4P22455 802 aa15.36■□□□□ 0.05
CCDC40-216ENST00000576241 SFPQP23246 707 aaKnown RBP eCLIP15.36■□□□□ 0.05
CCDC40-216ENST00000576241 AK2P54819 239 aa15.36■□□□□ 0.05
CCDC40-216ENST00000576241 PPP2R5CQ13362 524 aa15.36■□□□□ 0.05
CCDC40-216ENST00000576241 PDE12Q6L8Q7 609 aaKnown RBP15.36■□□□□ 0.05
CCDC40-216ENST00000576241 PIK3AP1Q6ZUJ8 805 aa15.36■□□□□ 0.05
CCDC40-216ENST00000576241 RBM23Q86U06 439 aaKnown RBP15.36■□□□□ 0.05
CCDC40-216ENST00000576241 LRRC43Q8N309 656 aa15.36■□□□□ 0.05
CCDC40-216ENST00000576241 TLE6Q9H808 572 aa15.36■□□□□ 0.05
CCDC40-216ENST00000576241 BRMS1Q9HCU9 246 aa15.36■□□□□ 0.05
CCDC40-216ENST00000576241 KCNMB3Q9NPA1 279 aa15.36■□□□□ 0.05
CCDC40-216ENST00000576241 HCSTQ9UBK5 93 aa15.36■□□□□ 0.05
CCDC40-216ENST00000576241 PUF60Q9UHX1 559 aaKnown RBP15.36■□□□□ 0.05
CCDC40-216ENST00000576241 KMT2BQ9UMN6 2715 aaPredicted RBP15.35■□□□□ 0.05
CCDC40-216ENST00000576241 EVPLQ92817 2033 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 A0A0U1RQF3 1178 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 EIF5BO60841 1220 aaKnown RBP15.35■□□□□ 0.05
CCDC40-216ENST00000576241 MAFO75444 373 aaPredicted RBP15.35■□□□□ 0.05
CCDC40-216ENST00000576241 PPM1AP35813 382 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 QARSP47897 775 aaKnown RBP15.35■□□□□ 0.05
CCDC40-216ENST00000576241 SIGLEC14Q08ET2 396 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 DRP2Q13474 957 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 ZNF410Q86VK4 478 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 SLC7A3Q8WY07 619 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 ASIC4Q96FT7 647 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 ZNF558Q96NG5 402 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 CASD1Q96PB1 797 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 SH2D3AQ9BRG2 576 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 INO80BQ9C086 356 aaPredicted RBP15.35■□□□□ 0.05
CCDC40-216ENST00000576241 CWH43Q9H720 699 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 SUCLA2Q9P2R7 463 aaPredicted RBP15.35■□□□□ 0.05
CCDC40-216ENST00000576241 VAV3Q9UKW4 847 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 LZTS1Q9Y250 596 aa15.35■□□□□ 0.05
CCDC40-216ENST00000576241 A0A087WZ62 844 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 IGKV6-21A0A0C4DH24 114 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 EML1O00423 815 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 TBX3O15119 743 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 CSDE1O75534 798 aaKnown RBP15.34■□□□□ 0.05
CCDC40-216ENST00000576241 STBD1O95210 358 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 EOMESO95936 686 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 KRT17Q04695 432 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 ERICH6BQ5W0A0 696 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 PLA2G4FQ68DD2 849 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 ANO5Q75V66 913 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 RHPN2Q8IUC4 686 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 EXOC8Q8IYI6 725 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 OXER1Q8TDS5 423 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 MSLNLQ96KJ4 702 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 CEP89Q96ST8 783 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 CDCA3Q99618 268 aaPredicted RBP15.34■□□□□ 0.05
CCDC40-216ENST00000576241 FDXACB1Q9BRP7 624 aaPredicted RBP15.34■□□□□ 0.05
CCDC40-216ENST00000576241 CYP26B1Q9NR63 512 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 CHST12Q9NRB3 414 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 GJB4Q9NTQ9 266 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 RNF19AQ9NV58 838 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 PCDHGC5Q9Y5F6 944 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 VPS13AQ96RL7 3174 aa15.34■□□□□ 0.05
CCDC40-216ENST00000576241 KIAA1671Q9BY89 1806 aa15.33■□□□□ 0.05
CCDC40-216ENST00000576241 LOC730098B7Z3J9 87 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 DTNBO60941 627 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 BAG4O95429 457 aaKnown RBP15.33■□□□□ 0.04
CCDC40-216ENST00000576241 CTDNEP1O95476 244 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 P4HBP07237 508 aaKnown RBP15.33■□□□□ 0.04
CCDC40-216ENST00000576241 SRGAP2BP0DMP2 458 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 KRT2P35908 639 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms