RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CSPP1Q1MSJ5 1256 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 KIZQ2M2Z5 673 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 FBXO47Q5MNV8 452 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 SV2BQ7L1I2 683 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 DYMQ7RTS9 669 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 NME8Q8N427 588 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 ERCC4Q92889 916 aaPredicted RBP10.3□□□□□ -0.76
VPS35-211ENST00000569950 HPS3Q969F9 1004 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 SCLYQ96I15 445 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 PPP1R16BQ96T49 567 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 NTPCRQ9BSD7 190 aaKnown RBP10.3□□□□□ -0.76
VPS35-211ENST00000569950 KIFC3Q9BVG8 833 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 CELF4Q9BZC1 486 aaKnown RBP10.3□□□□□ -0.76
VPS35-211ENST00000569950 PPP1R12CQ9BZL4 782 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 BLZF1Q9H2G9 400 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 HIPK3Q9H422 1215 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 MAGEF1Q9HAY2 307 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 TMEM39AQ9NV64 488 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 ARHGAP28Q9P2N2 729 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 USP25Q9UHP3 1055 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 ODF2LQ9ULJ1 636 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 COL4A3BPQ9Y5P4 624 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 TRIP11Q15643 1979 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 TRIOBPQ9H2D6 2365 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 A0A087WZ62 844 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 TLR3O15455 904 aaKnown RBP10.29□□□□□ -0.76
VPS35-211ENST00000569950 GTPBP6O43824 516 aaPredicted RBP10.29□□□□□ -0.76
VPS35-211ENST00000569950 DARSP14868 501 aaKnown RBP10.29□□□□□ -0.76
VPS35-211ENST00000569950 SYN1P17600 705 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 HOXD13P35453 343 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 AFMP43652 599 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 NPTX2P47972 431 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 SARSP49591 514 aaKnown RBP10.29□□□□□ -0.76
VPS35-211ENST00000569950 CASP5P51878 434 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 NCKAP1LP55160 1127 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 CCL23P55773 120 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 MBTD1Q05BQ5 628 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 POU5F1BQ06416 359 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 PNOCQ13519 176 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 FAM102BQ5T8I3 360 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 MFSD5Q6N075 450 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 LRRC8DQ7L1W4 858 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 FAM228AQ86W67 206 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 RHPN2Q8IUC4 686 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 ELOA2Q8IYF1 753 aaPredicted RBP10.29□□□□□ -0.76
VPS35-211ENST00000569950 RETREG2Q8NC44 543 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 TMEM161BQ8NDZ6 487 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 RASSF8Q8NHQ8 419 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 PSPC1Q8WXF1 523 aaKnown RBP10.29□□□□□ -0.76
VPS35-211ENST00000569950 LINC01599Q8WXQ3 324 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 KIFAP3Q92845 792 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 OSMRQ99650 979 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 JPH2Q9BR39 696 aaPredicted RBP10.29□□□□□ -0.76
VPS35-211ENST00000569950 FDXACB1Q9BRP7 624 aaPredicted RBP10.29□□□□□ -0.76
VPS35-211ENST00000569950 HTATIP2Q9BUP3 242 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 TIPINQ9BVW5 301 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 NFKBIZQ9BYH8 718 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 IKZF4Q9H2S9 585 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 TMX1Q9H3N1 280 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 ZMYND8Q9ULU4 1186 aaPredicted RBP10.29□□□□□ -0.76
VPS35-211ENST00000569950 NOC2LQ9Y3T9 749 aaKnown RBP10.29□□□□□ -0.76
VPS35-211ENST00000569950 TRPV2Q9Y5S1 764 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 ANK1P16157 1881 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 GBF1Q92538 1859 aa10.29□□□□□ -0.76
VPS35-211ENST00000569950 ABLIM1O14639 778 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 EVI5O60447 810 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 PLS3P13797 630 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 BMP6P22004 513 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 FGFR4P22455 802 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 HOXA11P31270 313 aaPredicted RBP10.28□□□□□ -0.76
VPS35-211ENST00000569950 CRYBB1P53674 252 aaPredicted RBP10.28□□□□□ -0.76
VPS35-211ENST00000569950 COASYQ13057 564 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 BFSP2Q13515 415 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 PLEKHG4Q58EX7 1191 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 NT5DC1Q5TFE4 455 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 EPM2AIP1Q7L775 607 aaPredicted RBP10.28□□□□□ -0.76
VPS35-211ENST00000569950 RTN4RL1Q86UN2 441 aaPredicted RBP10.28□□□□□ -0.76
VPS35-211ENST00000569950 ZNF410Q86VK4 478 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 SFR1Q86XK3 245 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 EXOC8Q8IYI6 725 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 SPIRE2Q8WWL2 714 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 TCP11Q8WWU5 503 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 BADQ92934 168 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 MAP7D2Q96T17 732 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 PYM1Q9BRP8 204 aaKnown RBP10.28□□□□□ -0.76
VPS35-211ENST00000569950 PRO3102Q9H379 93 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 FZD8Q9H461 694 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 ERVK-5Q9HDB9 667 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 OLFML3Q9NRN5 406 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 NOD1Q9Y239 953 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 AKT3Q9Y243 479 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 USP20Q9Y2K6 914 aa10.28□□□□□ -0.76
VPS35-211ENST00000569950 PDCD11Q14690 1871 aaKnown RBP10.27□□□□□ -0.76
VPS35-211ENST00000569950 ZMYM2Q9UBW7 1377 aa10.27□□□□□ -0.76
VPS35-211ENST00000569950 TRANK1O15050 2925 aa10.27□□□□□ -0.76
VPS35-211ENST00000569950 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.27□□□□□ -0.77
VPS35-211ENST00000569950 GOLGA6L4A6NEF3 574 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 B4GALT5O43286 388 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 MGEA5O60502 916 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 SRGAP2CP0DJJ0 459 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms