RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CDC42EP1Q00587 391 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 GUCY1B3Q02153 619 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 ZNF410Q86VK4 478 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 CCDC83Q8IWF9 413 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 SLFN12Q8IYM2 578 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 RNF169Q8NCN4 708 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 TMEM143Q96AN5 459 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 CEP170P1Q96L14 293 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 NLRP4Q96MN2 994 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 TMEM117Q9H0C3 514 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 IGFLR1Q9H665 355 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 DHX33Q9H6R0 707 aaKnown RBP12.12□□□□□ -0.47
VPS39-208ENST00000564994 IFT122Q9HBG6 1241 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 BMP2KQ9NSY1 1161 aaPredicted RBP12.12□□□□□ -0.47
VPS39-208ENST00000564994 PCDHB12Q9Y5F1 795 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 NCK2O43639 380 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 FGF18O76093 207 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 BAG4O95429 457 aaKnown RBP12.11□□□□□ -0.47
VPS39-208ENST00000564994 PBX3P40426 434 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 POLGP54098 1239 aaPredicted RBP12.11□□□□□ -0.47
VPS39-208ENST00000564994 ERVFC1P60507 584 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 ADAM15Q13444 863 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 TRIM29Q14134 588 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 CLUL1Q15846 466 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 CALCRLQ16602 461 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 PRPF31Q8WWY3 499 aaKnown RBP12.11□□□□□ -0.47
VPS39-208ENST00000564994 SLC7A3Q8WY07 619 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 MTMR9Q96QG7 549 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 HSD17B14Q9BPX1 270 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 EIF2AK1Q9BQI3 630 aaKnown RBP12.11□□□□□ -0.47
VPS39-208ENST00000564994 JPH2Q9BR39 696 aaPredicted RBP12.11□□□□□ -0.47
VPS39-208ENST00000564994 TMEM60Q9H2L4 133 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 EPHX3Q9H6B9 360 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 ZSWIM4Q9H7M6 989 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 TTC12Q9H892 705 aaPredicted RBP12.11□□□□□ -0.47
VPS39-208ENST00000564994 MINDY3Q9H8M7 445 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 CHST12Q9NRB3 414 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 AAASQ9NRG9 546 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 DACT1Q9NYF0 836 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 PCDHA12Q9UN75 941 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 COL4A3BPQ9Y5P4 624 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 TRIOO75962 3097 aa12.11□□□□□ -0.47
VPS39-208ENST00000564994 HOXA2O43364 376 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 NEMFO60524 1076 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 GLP2RO95838 553 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 EOMESO95936 686 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 LAG3P18627 525 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 SFPQP23246 707 aaKnown RBP eCLIP12.1□□□□□ -0.47
VPS39-208ENST00000564994 RFC5P40937 340 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 TXKP42681 527 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 PHKA2P46019 1235 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 NRIP1P48552 1158 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 UBE3AQ05086 875 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 EMC2Q15006 297 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 PUS10Q3MIT2 529 aaKnown RBP12.1□□□□□ -0.47
VPS39-208ENST00000564994 XKR9Q5GH70 373 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 KCNT2Q6UVM3 1135 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 RBM23Q86U06 439 aaKnown RBP12.1□□□□□ -0.47
VPS39-208ENST00000564994 TPH2Q8IWU9 490 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 THNSL1Q8IYQ7 743 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 ABI1Q8IZP0 508 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 LRRC43Q8N309 656 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 HELQQ8TDG4 1101 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 PSPC1Q8WXF1 523 aaKnown RBP12.1□□□□□ -0.47
VPS39-208ENST00000564994 TRAIPQ9BWF2 469 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 INO80BQ9C086 356 aaPredicted RBP12.1□□□□□ -0.47
VPS39-208ENST00000564994 XPNPEP1Q9NQW7 623 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 TLR9Q9NR96 1032 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 CLEC1BQ9P126 229 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 PIN4Q9Y237 131 aaKnown RBP12.1□□□□□ -0.47
VPS39-208ENST00000564994 PPME1Q9Y570 386 aa12.1□□□□□ -0.47
VPS39-208ENST00000564994 POTEMA6NI47 508 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 MEIS3P2A8K0S8 358 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 FSCN2O14926 492 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 MBTPS2O43462 519 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 LYPLA2O95372 231 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 SRGAP2CP0DJJ0 459 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 RBM10P98175 930 aaKnown RBP12.09□□□□□ -0.47
VPS39-208ENST00000564994 PLCB3Q01970 1234 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 LAMTOR4Q0VGL1 99 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 CSPP1Q1MSJ5 1256 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 LONRF3Q496Y0 759 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 TWF2Q6IBS0 349 aaKnown RBP12.09□□□□□ -0.47
VPS39-208ENST00000564994 OTUD6AQ7L8S5 288 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 CATSPER4Q7RTX7 472 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 FERMT3Q86UX7 667 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 GJD3Q8N144 294 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 EFHBQ8N7U6 833 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 MRPS27Q92552 414 aaKnown RBP12.09□□□□□ -0.47
VPS39-208ENST00000564994 LPPQ93052 612 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 C8orf76Q96K31 380 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 MSLNLQ96KJ4 702 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 LLPHQ9BRT6 129 aaKnown RBP12.09□□□□□ -0.47
VPS39-208ENST00000564994 AGPAT5Q9NUQ2 364 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 FAM105AQ9NUU6 356 aa12.09□□□□□ -0.47
VPS39-208ENST00000564994 A0A087WWV3 80 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 PER2O15055 1255 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 ATP2B1P20020 1258 aa12.08□□□□□ -0.48
VPS39-208ENST00000564994 HOXA11P31270 313 aaPredicted RBP12.08□□□□□ -0.48
VPS39-208ENST00000564994 MCM7P33993 719 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms