RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 ALCAMQ13740 583 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 CCSAPQ6IQ19 270 aaPredicted RBP11.19□□□□□ -0.62
SMG1-208ENST00000563448 FOXR2Q6PJQ5 311 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 STXBP4Q6ZWJ1 553 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 IRF2BP1Q8IU81 584 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 SLC17A8Q8NDX2 589 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 TMEM161BQ8NDZ6 487 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 SH3TC2Q8TF17 1288 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 PRPF31Q8WWY3 499 aaKnown RBP11.19□□□□□ -0.62
SMG1-208ENST00000563448 JPH2Q9BR39 696 aaPredicted RBP11.19□□□□□ -0.62
SMG1-208ENST00000563448 SRRTQ9BXP5 876 aaKnown RBP11.19□□□□□ -0.62
SMG1-208ENST00000563448 SETD4Q9NVD3 440 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 PDXKO00764 312 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 MAGEB2O15479 319 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 CST5P28325 142 aaPredicted RBP11.19□□□□□ -0.62
SMG1-208ENST00000563448 NAMPTP43490 491 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 CLCN3P51790 818 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 CAPSQ13938 189 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 HIC1Q14526 733 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 LHX8Q68G74 356 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 SARM1Q6SZW1 724 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 CSGALNACT2Q8N6G5 542 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 LMBR1Q8WVP7 490 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 TSG101Q99816 390 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 MTG1Q9BT17 334 aaPredicted RBP11.19□□□□□ -0.62
SMG1-208ENST00000563448 KATNAL1Q9BW62 490 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 HMX1Q9NP08 348 aaPredicted RBP11.19□□□□□ -0.62
SMG1-208ENST00000563448 TYW1Q9NV66 732 aaKnown RBP11.19□□□□□ -0.62
SMG1-208ENST00000563448 ARHGAP28Q9P2N2 729 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 TRAF3IP3Q9Y228 551 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 RRN3P2A6NIE6 340 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 ZEB2O60315 1214 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 ADCY5O95622 1261 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 FANCCQ00597 558 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 PPP2R5AQ15172 486 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 KCNA10Q16322 511 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 CXCL17Q6UXB2 119 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 LRRC55Q6ZSA7 311 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 TAS1R3Q7RTX0 852 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 METTL13Q8N6R0 699 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 RETREG2Q8NC44 543 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 PSPC1Q8WXF1 523 aaKnown RBP11.18□□□□□ -0.62
SMG1-208ENST00000563448 THAP9Q9H5L6 903 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 SUCLA2Q9P2R7 463 aaPredicted RBP11.18□□□□□ -0.62
SMG1-208ENST00000563448 KCNG1Q9UIX4 513 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 TBX20Q9UMR3 447 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 ANK1P16157 1881 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 NRCAMQ92823 1304 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 DENND3A2RUS2 1198 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 LRRIQ4A6NIV6 560 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 CALUO43852 315 aaPredicted RBP11.18□□□□□ -0.62
SMG1-208ENST00000563448 ASGR1P07306 291 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 GJB1P08034 283 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 HSPA8P11142 646 aaKnown RBP11.18□□□□□ -0.62
SMG1-208ENST00000563448 CDK11BP21127 795 aaKnown RBP11.18□□□□□ -0.62
SMG1-208ENST00000563448 DEKP35659 375 aaKnown RBP11.18□□□□□ -0.62
SMG1-208ENST00000563448 ADAM17P78536 824 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 LAMTOR4Q0VGL1 99 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 EDRF1Q3B7T1 1238 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 PPP4R3CPQ6ZMV5 832 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 APTXQ7Z2E3 356 aaKnown RBP11.18□□□□□ -0.62
SMG1-208ENST00000563448 RHPN2Q8IUC4 686 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 ZC3H3Q8IXZ2 948 aaKnown RBP11.18□□□□□ -0.62
SMG1-208ENST00000563448 NOC3LQ8WTT2 800 aaKnown RBP11.18□□□□□ -0.62
SMG1-208ENST00000563448 KCNN1Q92952 543 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 HVCN1Q96D96 273 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 EEF2KMTQ96G04 330 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 ACCSQ96QU6 501 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 TMEM206Q9H813 350 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 HDAC6Q9UBN7 1215 aa11.18□□□□□ -0.62
SMG1-208ENST00000563448 MBLAC1A4D2B0 266 aaPredicted RBP11.17□□□□□ -0.62
SMG1-208ENST00000563448 KCNJ18B7U540 433 aa11.17□□□□□ -0.62
SMG1-208ENST00000563448 CLIC2O15247 247 aa11.17□□□□□ -0.62
SMG1-208ENST00000563448 MSCO60682 206 aa11.17□□□□□ -0.62
SMG1-208ENST00000563448 HOXC8P31273 242 aa11.17□□□□□ -0.62
SMG1-208ENST00000563448 DNM2P50570 870 aa11.17□□□□□ -0.62
SMG1-208ENST00000563448 ZNF75DP51815 510 aa11.17□□□□□ -0.62
SMG1-208ENST00000563448 FKBP3Q00688 224 aaKnown RBP11.17□□□□□ -0.62
SMG1-208ENST00000563448 KCNJ12Q14500 433 aa11.17□□□□□ -0.62
SMG1-208ENST00000563448 MXD4Q14582 209 aaPredicted RBP11.17□□□□□ -0.62
SMG1-208ENST00000563448 NFRKBQ6P4R8 1299 aa11.17□□□□□ -0.62
SMG1-208ENST00000563448 DEPTORQ8TB45 409 aa11.17□□□□□ -0.62
SMG1-208ENST00000563448 TRIM5Q9C035 493 aa11.17□□□□□ -0.62
SMG1-208ENST00000563448 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.17□□□□□ -0.62
SMG1-208ENST00000563448 GBP3Q9H0R5 595 aa11.17□□□□□ -0.62
SMG1-208ENST00000563448 UNC93B1Q9H1C4 597 aa11.17□□□□□ -0.62
SMG1-208ENST00000563448 H0YCG3 227 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 ASAP2O43150 1006 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 MYCNP04198 464 aaPredicted RBP11.16□□□□□ -0.62
SMG1-208ENST00000563448 SRGAP2CP0DJJ0 459 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 ZNF200P98182 395 aaPredicted RBP11.16□□□□□ -0.62
SMG1-208ENST00000563448 NBPF20Q3BBV1 942 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 TCP11X2Q5H9J9 407 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 CDCA2Q69YH5 1023 aaPredicted RBP11.16□□□□□ -0.62
SMG1-208ENST00000563448 RNF180Q86T96 592 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 MAP4K3Q8IVH8 894 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 SYCP3Q8IZU3 236 aa11.16□□□□□ -0.62
SMG1-208ENST00000563448 PCSK9Q8NBP7 692 aaKnown RBP11.16□□□□□ -0.62
SMG1-208ENST00000563448 NAP1L5Q96NT1 182 aaPredicted RBP11.16□□□□□ -0.62
SMG1-208ENST00000563448 IFNKQ9P0W0 207 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms