RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 MTERF2Q49AM1 385 aa21.38■■□□□ 1.01
VPS35-202ENST00000561713 Q4G0T1 1027 aa21.38■■□□□ 1.01
VPS35-202ENST00000561713 CPLX2Q6PUV4 134 aaKnown RBP21.38■■□□□ 1.01
VPS35-202ENST00000561713 ETNPPLQ8TBG4 499 aa21.38■■□□□ 1.01
VPS35-202ENST00000561713 SCLT1Q96NL6 688 aa21.38■■□□□ 1.01
VPS35-202ENST00000561713 CASD1Q96PB1 797 aa21.38■■□□□ 1.01
VPS35-202ENST00000561713 ELAC1Q9H777 363 aaKnown RBP21.38■■□□□ 1.01
VPS35-202ENST00000561713 RNF19AQ9NV58 838 aa21.38■■□□□ 1.01
VPS35-202ENST00000561713 PUF60Q9UHX1 559 aaKnown RBP21.38■■□□□ 1.01
VPS35-202ENST00000561713 ZFHX2Q9C0A1 2572 aaPredicted RBP21.37■■□□□ 1.01
VPS35-202ENST00000561713 SRGAP2BP0DMP2 458 aa21.37■■□□□ 1.01
VPS35-202ENST00000561713 AVPR2P30518 371 aa21.37■■□□□ 1.01
VPS35-202ENST00000561713 SFNP31947 248 aa21.37■■□□□ 1.01
VPS35-202ENST00000561713 NONOQ15233 471 aaKnown RBP eCLIP21.37■■□□□ 1.01
VPS35-202ENST00000561713 TMEM117Q9H0C3 514 aa21.37■■□□□ 1.01
VPS35-202ENST00000561713 ADAMTS10Q9H324 1103 aa21.37■■□□□ 1.01
VPS35-202ENST00000561713 DDX25Q9UHL0 483 aaKnown RBP21.37■■□□□ 1.01
VPS35-202ENST00000561713 CDH22Q9UJ99 828 aa21.37■■□□□ 1.01
VPS35-202ENST00000561713 FAM205CA6NFA0 338 aa21.36■■□□□ 1.01
VPS35-202ENST00000561713 MAGEB2O15479 319 aa21.36■■□□□ 1.01
VPS35-202ENST00000561713 CSDE1O75534 798 aaKnown RBP21.36■■□□□ 1.01
VPS35-202ENST00000561713 LARGE1O95461 756 aa21.36■■□□□ 1.01
VPS35-202ENST00000561713 PDGFBP01127 241 aaPredicted RBP21.36■■□□□ 1.01
VPS35-202ENST00000561713 GPC3P51654 580 aa21.36■■□□□ 1.01
VPS35-202ENST00000561713 TBC1D8BQ0IIM8 1120 aa21.36■■□□□ 1.01
VPS35-202ENST00000561713 LETM2Q2VYF4 491 aa21.36■■□□□ 1.01
VPS35-202ENST00000561713 KCNT2Q6UVM3 1135 aa21.36■■□□□ 1.01
VPS35-202ENST00000561713 OXER1Q8TDS5 423 aa21.36■■□□□ 1.01
VPS35-202ENST00000561713 C22orf23Q9BZE7 217 aa21.36■■□□□ 1.01
VPS35-202ENST00000561713 SLKQ9H2G2 1235 aaPredicted RBP21.36■■□□□ 1.01
VPS35-202ENST00000561713 NGRNQ9NPE2 291 aaKnown RBP21.36■■□□□ 1.01
VPS35-202ENST00000561713 STK36Q9NRP7 1315 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 CYP3A7-CYP3A51PA0A087WV96 503 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 ST18O60284 1047 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 CYP3A7P24462 503 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 FOSBP53539 338 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 PLA2G4FQ68DD2 849 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 B3GNT9Q6UX72 402 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 KRT25Q7Z3Z0 450 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 ZBTB33Q86T24 672 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 RNF169Q8NCN4 708 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 MBOAT7Q96N66 472 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 PHF20Q9BVI0 1012 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 TSHZ2Q9NRE2 1034 aa21.35■■□□□ 1.01
VPS35-202ENST00000561713 EML1O00423 815 aa21.34■■□□□ 1.01
VPS35-202ENST00000561713 CTDNEP1O95476 244 aa21.34■■□□□ 1.01
VPS35-202ENST00000561713 AK2P54819 239 aa21.34■■□□□ 1.01
VPS35-202ENST00000561713 TARBP2Q15633 366 aaKnown RBP21.34■■□□□ 1.01
VPS35-202ENST00000561713 EARS2Q5JPH6 523 aaKnown RBP21.34■■□□□ 1.01
VPS35-202ENST00000561713 TMC7Q7Z402 723 aa21.34■■□□□ 1.01
VPS35-202ENST00000561713 NECAB1Q8N987 351 aa21.34■■□□□ 1.01
VPS35-202ENST00000561713 NLRP7Q8WX94 980 aa21.34■■□□□ 1.01
VPS35-202ENST00000561713 ZNF558Q96NG5 402 aa21.34■■□□□ 1.01
VPS35-202ENST00000561713 NRBP2Q9NSY0 501 aa21.34■■□□□ 1.01
VPS35-202ENST00000561713 VPS13AQ96RL7 3174 aa21.34■■□□□ 1.01
VPS35-202ENST00000561713 CCDC194A0A1B0GVG4 234 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 HOXA2O43364 376 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 PFKFB2O60825 505 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 CDKL5O76039 1030 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 STBD1O95210 358 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 HOXB8P17481 243 aaPredicted RBP21.33■■□□□ 1.01
VPS35-202ENST00000561713 TMOD1P28289 359 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 KRT17Q04695 432 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 PIK3AP1Q6ZUJ8 805 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 ABI1Q8IZP0 508 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 LRRC43Q8N309 656 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 ATOH1Q92858 354 aaPredicted RBP21.33■■□□□ 1.01
VPS35-202ENST00000561713 SNX27Q96L92 541 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 RIPOR3Q96MK2 946 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 BMP2KQ9NSY1 1161 aaPredicted RBP21.33■■□□□ 1.01
VPS35-202ENST00000561713 PPP4R2Q9NY27 417 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 SPG21Q9NZD8 308 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 VAV3Q9UKW4 847 aa21.33■■□□□ 1.01
VPS35-202ENST00000561713 CACNA1HO95180 2353 aa21.32■■□□□ 1
VPS35-202ENST00000561713 GFRA3O60609 400 aa21.32■■□□□ 1
VPS35-202ENST00000561713 DARSP14868 501 aaKnown RBP21.32■■□□□ 1
VPS35-202ENST00000561713 ZSCAN20P17040 1043 aaPredicted RBP21.32■■□□□ 1
VPS35-202ENST00000561713 EIF4BP23588 611 aaKnown RBP21.32■■□□□ 1
VPS35-202ENST00000561713 PPM1AP35813 382 aa21.32■■□□□ 1
VPS35-202ENST00000561713 CLLU1OSQ5K130 101 aa21.32■■□□□ 1
VPS35-202ENST00000561713 GALNT17Q6IS24 598 aa21.32■■□□□ 1
VPS35-202ENST00000561713 MOXD1Q6UVY6 613 aa21.32■■□□□ 1
VPS35-202ENST00000561713 ECHDC2Q86YB7 292 aa21.32■■□□□ 1
VPS35-202ENST00000561713 POTEDQ86YR6 584 aa21.32■■□□□ 1
VPS35-202ENST00000561713 KREMEN2Q8NCW0 462 aa21.32■■□□□ 1
VPS35-202ENST00000561713 RDM1Q8NG50 284 aa21.32■■□□□ 1
VPS35-202ENST00000561713 CEP89Q96ST8 783 aa21.32■■□□□ 1
VPS35-202ENST00000561713 DDX11L8A8MPP1 907 aa21.31■■□□□ 1
VPS35-202ENST00000561713 H0Y858 1186 aa21.31■■□□□ 1
VPS35-202ENST00000561713 XKR3Q5GH77 459 aa21.31■■□□□ 1
VPS35-202ENST00000561713 NEK8Q86SG6 692 aa21.31■■□□□ 1
VPS35-202ENST00000561713 MRPL43Q8N983 215 aaKnown RBP21.31■■□□□ 1
VPS35-202ENST00000561713 CASP10Q92851 521 aa21.31■■□□□ 1
VPS35-202ENST00000561713 POMKQ9H5K3 350 aa21.31■■□□□ 1
VPS35-202ENST00000561713 WRAP73Q9P2S5 460 aaPredicted RBP21.31■■□□□ 1
VPS35-202ENST00000561713 ORC3Q9UBD5 711 aaPredicted RBP21.31■■□□□ 1
VPS35-202ENST00000561713 NR2E1Q9Y466 385 aa21.31■■□□□ 1
VPS35-202ENST00000561713 HCFC2Q9Y5Z7 792 aa21.31■■□□□ 1
VPS35-202ENST00000561713 C2orf71A6NGG8 1288 aa21.3■■□□□ 1
VPS35-202ENST00000561713 C2CD4DB7Z1M9 353 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms